General information
PDB ID 3CLZ
Title THE SET AND RING ASSOCIATED (SRA) DOMAIN OF UHRF1 BOUND TO METHYLATED DNA
PDB header LIGASE
Date 2008-03-20
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.2
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3clz.pdb ABCD EFGHIJKL 0
Biounits:
3clz.pdb1.pdb A EF 1
3clz.pdb2.pdb B GH 1
3clz.pdb3.pdb C IJ 1
3clz.pdb4.pdb D KL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SAD_SRA Domain Q96T88_417-586 6.1e-59 1 CL0178 A 417 586 EF  H-Bb S-Bb L-Bb L-Mj L-Mn 
SAD_SRA Domain Q96T88_417-586 6.8e-59 1 CL0178 B 417 586 GH  H-Bb S-Bb L-Bb L-Mj L-Mn 
SAD_SRA Domain Q96T88_417-586 6.1e-59 1 CL0178 C 417 586 IJ  H-Bb S-Bb L-Bb L-Mj L-Mn 
SAD_SRA Domain Q96T88_417-586 6.6e-59 1 CL0178 D 417 586 KL  H-Bb S-Bb L-Bb L-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: PUA domain-like
    Superfamily: PUA domain-like
      Family: SRA domain-like
E3 ubiquitin-protein ligase UHRF1 A 416 617 EF -
Class: All beta proteins
  Fold: PUA domain-like
    Superfamily: PUA domain-like
      Family: SRA domain-like
E3 ubiquitin-protein ligase UHRF1 B 415 617 GH -
Class: All beta proteins
  Fold: PUA domain-like
    Superfamily: PUA domain-like
      Family: SRA domain-like
E3 ubiquitin-protein ligase UHRF1 C 416 617 IJ -
Class: All beta proteins
  Fold: PUA domain-like
    Superfamily: PUA domain-like
      Family: SRA domain-like
E3 ubiquitin-protein ligase UHRF1 D 416 617 KL -
GO terms
Protein chains: GO type: GO description:
A/B/C/D=414-617 C euchromatin
A/B/C/D=414-617 C heterochromatin
A/B/C/D=414-617 C nuclear chromatin
A/B/C/D=414-617 C nuclear heterochromatin
A/B/C/D=414-617 C nuclear matrix
A/B/C/D=414-617 C nucleoplasm
A/B/C/D=414-617 C nucleus
A/B/C/D=414-617 C replication fork
A/B/C/D=414-617 F cis-regulatory region sequence-specific DNA binding
A/B/C/D=414-617 F hemi-methylated DNA-binding
A/B/C/D=414-617 F histone binding
A/B/C/D=414-617 F identical protein binding
A/B/C/D=414-617 F methyl-CpG binding
A/B/C/D=414-617 F methylated histone binding
A/B/C/D=414-617 F nucleosomal histone binding
A/B/C/D=414-617 F ubiquitin protein ligase activity
A/B/C/D=414-617 F ubiquitin-protein transferase activity
A/B/C/D=414-617 F zinc ion binding
A/B/C/D=414-617 P cell cycle
A/B/C/D=414-617 P DNA repair
A/B/C/D=414-617 P histone monoubiquitination
A/B/C/D=414-617 P histone ubiquitination
A/B/C/D=414-617 P maintenance of DNA methylation
A/B/C/D=414-617 P negative regulation of transcription by RNA polymerase II
A/B/C/D=414-617 P positive regulation of cellular protein metabolic process
A/B/C/D=414-617 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
A/B/C/D=414-617 P positive regulation of transcription by RNA polymerase II
A/B/C/D=414-617 P protein autoubiquitination
A/B/C/D=414-617 P protein ubiquitination
A/B/C/D=414-617 P regulation of epithelial cell proliferation
A/B/C/D=414-617 P ubiquitin-dependent protein catabolic process
Sequences
Download file with secondary structure created by Stride  
3clz.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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3clz.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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B (protein): 
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3clz.pdb3.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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C (protein): 
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3clz.pdb4.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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D (protein): 
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