General information
PDB ID 3COQ
Title STRUCTURAL BASIS FOR DIMERIZATION IN DNA RECOGNITION BY GAL4
PDB header TRANSCRIPTION/DNA
Date 2008-03-29
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.4
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3coq.pdb AB DE 0
Biounits:
3coq.pdb1.pdb AB DE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Zn_clus Domain P04386_9-47 0.00000000004 1 No_clan A 9 47 DE  H-Bb H-Mj L-Bb L-Mj 
Zn_clus Domain P04386_9-47 0.00000000004 1 No_clan B 9 47 DE  H-Bb H-Mj L-Bb L-Mj 
Gal4_dimer Family P04386_50-96 3.2e-21 1 No_clan A 50 96 D  H-Bb 
Gal4_dimer Family P04386_50-96 3.2e-21 1 No_clan B 50 96 E  H-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Small proteins
  Fold: Zn2/Cys6 DNA-binding domain
    Superfamily: Zn2/Cys6 DNA-binding domain
      Family: Zn2/Cys6 DNA-binding domain
Gal4 A 8 48 DE  H-Bb H-Mj L-Bb L-Mj 
Class: Coiled coil proteins
  Fold: Parallel coiled-coil
    Superfamily: Leucine zipper domain
      Family: Leucine zipper domain
CD2-Gal4 A 50 96 D  H-Bb 
Class: Small proteins
  Fold: Zn2/Cys6 DNA-binding domain
    Superfamily: Zn2/Cys6 DNA-binding domain
      Family: Zn2/Cys6 DNA-binding domain
Gal4 B 8 48 DE  H-Bb H-Mj L-Bb L-Mj 
Class: Coiled coil proteins
  Fold: Parallel coiled-coil
    Superfamily: Leucine zipper domain
      Family: Leucine zipper domain
CD2-Gal4 B 50 96 E  H-Bb 
GO terms
Protein chains: GO type: GO description:
A/B=8-96 C nucleus
A/B=8-96 F RNA polymerase II core promoter proximal region sequence-specific DNA binding
A/B=8-96 F zinc ion binding
A/B=8-96 F sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity
A/B=8-96 F RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
A/B=8-96 P positive regulation of transcription from RNA polymerase II promoter by galactose
A/B=8-96 P galactose metabolic process
Sequences
Download file with secondary structure created by Stride  
3coq.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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B (protein): 
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