General information
PDB ID 3CW1
Title CRYSTAL STRUCTURE OF HUMAN SPLICEOSOMAL U1 SNRNP
PDB header SPLICING
Date 2008-04-21
Experimental method X-RAY DIFFRACTION
Resolution (A) 5.49
Kind rna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3cw1.pdb DABCFEGKLSHMPZW369TINQ1X470UJOR2Y58l Vvwx 0
Biounits:
3cw1.pdb1.pdb DABCFEGKL V 1
3cw1.pdb2.pdb SHMPZW369 v 1
3cw1.pdb3.pdb TINQ1X470 w 1
3cw1.pdb4.pdb UJOR2Y58l x 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-U1 Domain P09234_4-38 1.8e-20 1 CL0361 0 404 441   
LSM Domain P62306_9-74 1.1e-21 1 CL0527 1 409 474   
LSM Domain P62306_9-74 1.2e-21 1 CL0527 2 609 674   
LSM Domain P62308_7-72 6e-23 1 CL0527 3 207 272   
LSM Domain P62308_7-72 6e-23 1 CL0527 4 407 472   
LSM Domain P62308_7-72 6e-23 1 CL0527 5 607 672   
RRM_1 Domain P08621_105-175 4e-19 1 CL0221 6 305 375   
RRM_1 Domain P08621_105-175 4e-19 1 CL0221 7 505 575   
RRM_1 Domain P08621_105-175 4e-19 1 CL0221 8 705 775   
zf-U1 Domain P09234_4-38 2.2e-20 1 CL0361 9 204 241   
LSM Domain P14678_7-82 3.3e-17 1 CL0527 A 7 82   
LSM Domain P62314_5-70 1.5e-19 1 CL0527 B 5 70   
LSM Domain P62316_33-111 6.2e-19 1 CL0527 C 33 111   
LSM Domain P62318_8-73 0.0000000000000018 1 CL0527 D 8 73   
LSM Domain P62304_23-89 4.5e-18 1 CL0527 E 23 89   
LSM Domain P62306_9-74 1.2e-21 1 CL0527 F 9 74   
LSM Domain P62308_7-72 6e-23 1 CL0527 G 7 72   
LSM Domain P14678_7-82 3.3e-17 1 CL0527 H 207 282   
LSM Domain P14678_7-82 4.1e-17 1 CL0527 I 407 482   
LSM Domain P14678_7-82 3.1e-17 1 CL0527 J 607 682   
RRM_1 Domain P08621_105-175 4e-19 1 CL0221 K 105 175   
zf-U1 Domain P09234_4-38 2.1e-20 1 CL0361 L 4 41   
zf-U1 Domain P09234_4-38 2.1e-20 1 CL0361 L 4 41   
zf-U1 Domain P09234_4-38 2.2e-20 1 CL0361 l 604 641   
zf-U1 Domain P09234_4-38 2.2e-20 1 CL0361 l 604 641   
LSM Domain P62314_5-70 1.5e-19 1 CL0527 M 205 270   
LSM Domain P62314_5-70 1.4e-19 1 CL0527 N 405 470   
LSM Domain P62314_5-70 1.5e-19 1 CL0527 O 605 670   
LSM Domain P62316_33-111 5.8e-19 1 CL0527 P 233 311   
LSM Domain P62316_33-111 8.8e-20 1 CL0527 Q 433 511   
LSM Domain P62316_33-111 4.7e-17 1 CL0527 R 633 711   
LSM Domain P62318_8-73 0.0000000000000018 1 CL0527 S 208 273   
LSM Domain P62318_8-73 0.0000000000000018 1 CL0527 T 408 473   
LSM Domain P62318_8-73 0.0000000000000018 1 CL0527 U 608 673   
LSM Domain P62304_23-89 4.5e-18 1 CL0527 W 223 289   
LSM Domain P62304_23-89 4.5e-18 1 CL0527 X 423 489   
LSM Domain P62304_23-89 4.5e-18 1 CL0527 Y 623 689   
LSM Domain P62306_9-74 8.9e-22 1 CL0527 Z 209 274   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
0/9/L/l=1-77 C U1 snRNP
0/9/L/l=1-77 C Cajal body
0/9/L/l=1-77 F zinc ion binding
0/9/L/l=1-77 F single-stranded RNA binding
6/7/8/K=1-216 C spliceosomal complex
6/7/8/K=1-216 C nuclear speck
6/7/8/K=1-216 F nucleotide binding
6/7/8/K=1-216 P nuclear mRNA splicing, via spliceosome
6/7/8/K=1-216 P regulation of RNA splicing
A/H/I/J=1-174 C U12-type spliceosomal complex
A/H/I/J=1-174 C histone pre-mRNA 3'end processing complex
A/H/I/J=1-174 C nucleoplasm
A/H/I/J=1-174 C U7 snRNP
A/H/I/J=1-174 C catalytic step 2 spliceosome
A/H/I/J=1-174 C cytosol
A/H/I/J=1-174 F histone pre-mRNA DCP binding
A/H/I/J=1-174 P ncRNA metabolic process
A/H/I/J=1-174 P termination of RNA polymerase II transcription
A/H/I/J=1-174 P spliceosomal snRNP assembly
A/H/I/J=1-174 P histone mRNA metabolic process
B/M/N/O=1-119 C small nuclear ribonucleoprotein complex
B/M/N/O=1-119 F RNA binding
B/M/N/O=1-119 P spliceosomal complex assembly
Sequences
Download file with secondary structure created by Stride  
3cw1.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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K (protein): 
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L (protein): 
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V (rna): 
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3cw1.pdb2.pdb:   [ download sequences in FASTA format ]
3 (protein): 
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6 (protein): 
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9 (protein): 
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H (protein): 
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M (protein): 
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P (protein): 
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S (protein): 
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W (protein): 
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Z (protein): 
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v (rna): 
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3cw1.pdb3.pdb:   [ download sequences in FASTA format ]
0 (protein): 
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1 (protein): 
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4 (protein): 
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7 (protein): 
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I (protein): 
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N (protein): 
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Q (protein): 
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T (protein): 
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X (protein): 
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w (rna): 
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3cw1.pdb4.pdb:   [ download sequences in FASTA format ]
2 (protein): 
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5 (protein): 
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8 (protein): 
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J (protein): 
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l (protein): 
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O (protein): 
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R (protein): 
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U (protein): 
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Y (protein): 
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x (rna): 
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