General information
PDB ID 3CXC
Title THE STRUCTURE OF AN ENHANCED OXAZOLIDINONE INHIBITOR BOUND TO THE 50S RIBOSOMAL SUBUNIT OF H. MARISMORTUI
PDB header RIBOSOME
Date 2008-04-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind rna
Organism HALOARCULA MARISMORTUI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3cxc.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZ12 094 0
Biounits:
3cxc.pdb1.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZ12 094 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L2_C Domain P20276_90-225 6.9e-46 1 CL0107 A 89 224 0   
Ribosomal_L2 Domain P20276_11-83 3.2e-17 1 CL0021 A 10 82 0   
Ribosomal_L5 Domain P14124_12-65 5e-16 1 CL0652 D 11 64 09   
Ribosomal_L5_C Domain P14124_69-166 0.000000038 1 No_clan D 68 152 09   
Ribosomal_L6 Domain P14135_8-80 0.0000000000000058 1 No_clan E 7 79 0   
Ribosomal_L6 Domain P14135_92-166 0.000000000000097 1 No_clan E 91 165 0   
Ribosomal_L7Ae Domain P12743_15-108 3.1e-25 1 CL0101 F 14 108 0   
Ribosomal_L14 Domain P22450_12-132 4.8e-36 1 No_clan J 12 132 0   
Ribosomal_L22 Domain P10970_17-149 7.2e-25 1 No_clan Q 16 148 0   
Ribosomal_L30 Domain P14121_2-52 0.000000000073 1 No_clan V 2 52 09   
Ribosomal_L39 Family P22452_8-49 0.000000000000024 1 No_clan 1 7 48 0   
Ribosomal_L44 Family P32411_16-91 1.1e-25 1 CL0167 2 16 91 0   
Ribosomal_L3 Family P20279_2-338 1.2e-109 1 CL0575 B 1 337 0   
Ribosomal_L4 Family P12735_16-246 6.4e-41 1 No_clan C 16 246 0   
Ribosomal_L16 Family 1.6e-23 1 No_clan H 9 159 09
Ribosomal_L13 Family P29198_10-114 0.0000068 1 No_clan I 10 114 0   
Ribosomal_L27A Family P12737_25-143 9.4e-18 1 CL0588 K 24 142 0   
Ribosomal_L15e Family 3.6e-81 1 CL0652 L 3 190 0
Ribosomal_L5e Family P14123_5-100 6e-17 1 CL0267 M 4 99 09   
Ribosomal_L5e Family P14123_92-133 0.00000023 1 CL0267 M 91 132 09   
Ribosomal_L18 Family 0.0000086 0 CL0588 N 1 115 0
Ribosomal_L19e Family P14119_3-144 5.3e-56 1 No_clan O 2 143 0   
Ribosomal_L21e Family P12734_2-96 6.6e-26 1 CL0107 P 2 94 09   
Ribosomal_L23 Family P12732_4-77 0.0000000000000011 1 No_clan R 3 76 0   
Ribosomal_L26 Family P10972_2-116 4.1e-23 1 No_clan S 1 115 0   
KOW Family P10972_45-76 0.000000038 1 CL0107 S 44 75 0   
Ribosomal_L24e Family P14116_5-57 5.1e-21 1 CL0175 T 4 56 0   
Ribosomal_L29 Family P10971_7-63 6.4e-20 1 CL0346 U 6 62 0   
Ribosomal_L31e Family P18138_8-85 0.0000000012 1 No_clan W 8 84 0   
Ribosomal_L32e Family P12736_126-231 4e-35 1 No_clan X 125 230 0   
Ribosomal_L37ae Family 3.9e-27 1 CL0167 Y 10 82 0
Ribosomal_L37e Family P32410_3-56 1.9e-22 1 CL0167 Z 2 55 0   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
2=1-92 F metal ion binding
2=1-92 F tRNA binding
F=2-120 F RNA binding
G=1-348 P ribosome biogenesis
M=2-186 C ribosome
M=2-186 F structural constituent of ribosome
M=2-186 F 5S rRNA binding
M=2-186 P translation
V=1-154 C large ribosomal subunit
X=2-241 F DNA binding
X=2-241 F nucleotide binding
X=2-241 F rRNA binding
X=2-241 P DNA repair
Sequences
Download file with secondary structure created by Stride  
3cxc.pdb1.pdb:   [ download sequences in FASTA format ]
1 (protein): 
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2 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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0 (rna): 
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4 (rna): 
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9 (rna): 
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