General information
PDB ID 3D1N
Title STRUCTURE OF HUMAN BRN-5 TRANSCRIPTION FACTOR IN COMPLEX WITH CORTICOTROPHIN-RELEASING HORMONE GENE PROMOTER
PDB header TRANSCRIPTION REGULATOR/DNA
Date 2008-05-06
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.51
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3d1n.pdb IJKLMNOP ABCDEFGH 0
Biounits:
3d1n.pdb1.pdb KL CD 1
3d1n.pdb2.pdb OP GH 1
3d1n.pdb3.pdb IJ AB 1
3d1n.pdb4.pdb MN EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Pou Domain Q14863_143-213 1.9e-27 1 CL0123 I 143 213 AB  H-Bb H-Mj L-Mj 
Homeodomain Domain Q14863_235-287 5.8e-15 1 CL0123 I 235 291 AB  H-Bb H-Mj L-Bb L-Mn 
Pou Domain Q14863_143-213 3e-28 1 CL0123 J 142 213 AB  H-Bb H-Mj 
Pou Domain Q14863_143-213 1.9e-27 1 CL0123 K 143 213 CD  H-Bb H-Mj L-Mj 
Homeodomain Domain Q14863_235-287 5.8e-15 1 CL0123 K 235 291 CD  H-Bb H-Mj L-Bb L-Mn 
Pou Domain Q14863_143-213 1.8e-27 1 CL0123 L 143 213 CD  H-Bb H-Mj L-Bb 
Homeodomain Domain Q14863_235-287 2e-14 1 CL0123 L 235 287 C  H-Bb 
Pou Domain Q14863_143-213 1.9e-27 1 CL0123 M 143 213 EF  H-Bb H-Mj L-Mj 
Homeodomain Domain Q14863_235-287 5.8e-15 1 CL0123 M 235 291 EF  H-Bb H-Mj L-Bb L-Mn 
Pou Domain Q14863_143-213 3.5e-28 1 CL0123 N 143 213 EF  H-Bb H-Mj L-Bb 
Pou Domain Q14863_143-213 1.9e-27 1 CL0123 O 143 213 GH  H-Bb H-Mj L-Mj 
Homeodomain Domain Q14863_235-287 5.8e-15 1 CL0123 O 235 291 GH  H-Bb H-Mj L-Bb L-Mn 
Pou Domain Q14863_143-213 3.1e-28 1 CL0123 P 143 213 GH  H-Bb H-Mj L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
I/J/K/L/M/N/O/P=142-292 C nuclear chromatin
I/J/K/L/M/N/O/P=142-292 C nucleus
I/J/K/L/M/N/O/P=142-292 F DNA-binding transcription activator activity, RNA polymerase II-specific
I/J/K/L/M/N/O/P=142-292 F DNA-binding transcription factor activity
I/J/K/L/M/N/O/P=142-292 F DNA-binding transcription factor activity, RNA polymerase II-specific
I/J/K/L/M/N/O/P=142-292 F DNA-binding transcription repressor activity, RNA polymerase II-specific
I/J/K/L/M/N/O/P=142-292 F sequence-specific DNA binding
I/J/K/L/M/N/O/P=142-292 F sequence-specific double-stranded DNA binding
I/J/K/L/M/N/O/P=142-292 P brain development
I/J/K/L/M/N/O/P=142-292 P cell differentiation
I/J/K/L/M/N/O/P=142-292 P heart development
I/J/K/L/M/N/O/P=142-292 P muscle organ development
I/J/K/L/M/N/O/P=142-292 P negative regulation of transcription by RNA polymerase II
I/J/K/L/M/N/O/P=142-292 P positive regulation of transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
3d1n.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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K (protein): 
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L (protein): 
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3d1n.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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O (protein): 
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P (protein): 
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3d1n.pdb3.pdb:   [ download sequences in FASTA format ]
A (dna): 
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B (dna): 
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I (protein): 
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J (protein): 
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3d1n.pdb4.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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M (protein): 
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N (protein): 
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