General information
PDB ID 3DEG
Title COMPLEX OF ELONGATING ESCHERICHIA COLI 70S RIBOSOME AND EF4(LEPA)- GMPPNP
PDB header RIBOSOME
Date 2008-06-10
Experimental method ELECTRON MICROSCOPY
Resolution (A) 10.9
Kind rna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3deg.pdb CDH ABEFGIJK 0
Biounits:
3deg.pdb1.pdb CDH ABEFGIJK 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
GTP_EFTU Domain P60785_2-182 5.1e-53 1 CL0023 C 2 182 I   
EFG_C Domain P60785_398-486 3.4e-19 1 CL0437 C 398 486 I   
GTP_EFTU_D2 Domain P60785_205-275 2.6e-12 1 CL0575 C 205 275   
Ribosomal_L11_N Domain P0A7J7_2-67 1.2e-29 1 No_clan H 8 66 G   
Ribosomal_L11 Domain P0A7J7_72-140 4.4e-24 1 No_clan H 71 139 G   
LepA_C Family P60785_487-545 2.3e-20 1 No_clan C 487 545 A   
Ribosom_S12_S23 Family P0A7S3_12-123 4.9e-43 1 CL0021 D 11 122   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: Cold shock DNA-binding domain-like
Ribosomal protein S12 D 1 123 -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Ribosomal protein L11, C-terminal domain
      Family: Ribosomal protein L11, C-terminal domain
Ribosomal protein L11, C-terminal domain H 73 141 G -
Class: Alpha and beta proteins (a+b)
  Fold: Ribosomal L11/L12e N-terminal domain
    Superfamily: Ribosomal L11/L12e N-terminal domain
      Family: Ribosomal L11/L12e N-terminal domain
Ribosomal protein L11, N-terminal domain H 1 72 G -
GO terms
Protein chains: GO type: GO description:
C=1-545 C cytosol
C=1-545 C plasma membrane
C=1-545 F GTPase activity
C=1-545 F translation elongation factor activity
C=1-545 F GTP binding
C=1-545 P response to cold
C=1-545 P response to pH
C=1-545 P response to salt stress
D=2-124 C cytosolic small ribosomal subunit
D=2-124 F tRNA binding
D=2-124 F structural constituent of ribosome
D=2-124 F rRNA binding
D=2-124 F misfolded RNA binding
D=2-124 P positive regulation of RNA splicing
D=2-124 P Group I intron splicing
D=2-124 P response to antibiotic
D=2-124 P RNA folding
D=2-124 P translation
H=2-142 C cytosolic large ribosomal subunit
H=2-142 P stringent response
H=2-142 P translational termination
Sequences
Download file with secondary structure created by Stride  
3deg.pdb1.pdb:   [ download sequences in FASTA format ]
C (protein): 
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D (protein): 
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H (protein): 
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A (rna): 
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B (rna): 
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E (rna): 
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F (rna): 
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G (rna): 
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I (rna): 
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J (rna): 
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K (rna): 
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