General information
PDB ID 3DFV
Title ADJACENT GATA DNA BINDING
PDB header TRANSCRIPTION/DNA
Date 2008-06-12
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.1
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3dfv.pdb DC YZ 0
Biounits:
3dfv.pdb1.pdb DC YZ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
GATA Domain P23772_317-351 4.3e-16 1 CL0167 C 317 351 YZ  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
GATA Domain P23772_317-351 4.3e-16 1 CL0167 D 317 351 YZ  H-Bb H-Mj S-Bb L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
C/D=308-370 C nucleolus
C/D=308-370 C nuclear chromatin
C/D=308-370 C nucleus
C/D=308-370 F RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
C/D=308-370 F E-box binding
C/D=308-370 F core promoter proximal region sequence-specific DNA binding
C/D=308-370 F enhancer sequence-specific DNA binding
C/D=308-370 F transcription coactivator activity
C/D=308-370 F RNA polymerase II core promoter sequence-specific DNA binding
C/D=308-370 F RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
C/D=308-370 F zinc ion binding
C/D=308-370 P interleukin-4 secretion
C/D=308-370 P response to ethanol
C/D=308-370 P positive regulation of interleukin-4 production
C/D=308-370 P phosphatidylinositol 3-kinase cascade
C/D=308-370 P regulation of nephron tubule epithelial cell differentiation
C/D=308-370 P in utero embryonic development
C/D=308-370 P regulation of cytokine biosynthetic process
C/D=308-370 P negative regulation of interleukin-2 production
C/D=308-370 P response to estrogen stimulus
C/D=308-370 P response to drug
C/D=308-370 P male gonad development
C/D=308-370 P cellular response to interleukin-4
C/D=308-370 P positive regulation of interleukin-5 production
C/D=308-370 P ventricular septum development
C/D=308-370 P negative regulation of mammary gland epithelial cell proliferation
C/D=308-370 P mesenchymal to epithelial transition
C/D=308-370 P negative regulation of fat cell differentiation
C/D=308-370 P positive regulation of interleukin-13 secretion
C/D=308-370 P positive regulation of interleukin-5 secretion
C/D=308-370 P ureteric bud formation
C/D=308-370 P regulation of CD4-positive, alpha-beta T cell differentiation
C/D=308-370 P embryonic hemopoiesis
C/D=308-370 P response to gamma radiation
C/D=308-370 P lens development in camera-type eye
C/D=308-370 P post-embryonic development
C/D=308-370 P positive regulation of ureteric bud formation
C/D=308-370 P positive regulation of protein kinase B signaling cascade
C/D=308-370 P positive regulation of endothelial cell migration
C/D=308-370 P positive regulation of interleukin-13 production
C/D=308-370 P negative regulation of cell cycle
C/D=308-370 P canonical Wnt receptor signaling pathway involved in metanephric kidney development
C/D=308-370 P thymus development
C/D=308-370 P regulation of cellular response to X-ray
C/D=308-370 P mesonephros development
C/D=308-370 P inner ear morphogenesis
C/D=308-370 P positive regulation of transcription regulatory region DNA binding
C/D=308-370 P cellular response to BMP stimulus
C/D=308-370 P pharyngeal system development
C/D=308-370 P negative regulation of cell proliferation involved in mesonephros development
C/D=308-370 P nephric duct formation
C/D=308-370 P regulation of neuron apoptotic process
C/D=308-370 P cell maturation
C/D=308-370 P pro-T cell differentiation
C/D=308-370 P mast cell differentiation
C/D=308-370 P regulation of histone H3-K4 methylation
C/D=308-370 P axon guidance
C/D=308-370 P negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation
C/D=308-370 P regulation of histone H3-K27 methylation
C/D=308-370 P developmental growth
C/D=308-370 P T-helper 2 cell differentiation
C/D=308-370 P parathyroid gland development
C/D=308-370 P cardiac right ventricle morphogenesis
C/D=308-370 P negative regulation of endothelial cell apoptotic process
C/D=308-370 P thymic T cell selection
C/D=308-370 P negative regulation of cell motility
C/D=308-370 P sympathetic nervous system development
C/D=308-370 P otic vesicle development
C/D=308-370 P positive regulation of thyroid hormone generation
C/D=308-370 P neuron migration
C/D=308-370 P negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation
C/D=308-370 P negative regulation of interferon-gamma production
C/D=308-370 P cellular response to interferon-alpha
C/D=308-370 P humoral immune response
C/D=308-370 P aortic valve morphogenesis
C/D=308-370 P positive regulation of T cell differentiation
C/D=308-370 P lymphocyte migration
C/D=308-370 P cellular response to tumor necrosis factor
C/D=308-370 P regulation of establishment of cell polarity
C/D=308-370 P parathyroid hormone secretion
C/D=308-370 P uterus development
C/D=308-370 P ureter maturation
C/D=308-370 P TOR signaling cascade
C/D=308-370 P interferon-gamma secretion
C/D=308-370 P response to virus
C/D=308-370 P negative regulation of inflammatory response
C/D=308-370 P norepinephrine biosynthetic process
C/D=308-370 P cell fate determination
C/D=308-370 P T cell receptor signaling pathway
C/D=308-370 P erythrocyte differentiation
C/D=308-370 P type IV hypersensitivity
Sequences
Download file with secondary structure created by Stride  
3dfv.pdb1.pdb:   [ download sequences in FASTA format ]
Y (dna): 
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Z (dna): 
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C (protein): 
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D (protein): 
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