General information
PDB ID 3DO7
Title X-RAY STRUCTURE OF A NF-KB P52/RELB/DNA COMPLEX
PDB header TRANSCRIPTION/DNA
Date 2008-07-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.05
Kind dna
Organism MUS MUSCULUS, HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3do7.pdb AB CDE 0
Biounits:
3do7.pdb1.pdb AB CD 1
3do7.pdb2.pdb E 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RHD_DNA_bind Domain Q04863_105-273 2.3e-63 1 CL0073 A 105 273 CD  L-Bb L-Mj 
RHD_dimer Domain Q04863_282-378 6.1e-37 1 CL0159 A 282 379 C  L-Bb 
RHD_DNA_bind Domain Q00653_40-220 2.1e-66 1 CL0073 B 40 220 CD  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
RHD_dimer Domain Q00653_229-327 8.8e-39 1 CL0159 B 229 329 D  L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=88-383 C centrosome
A=88-383 C cytosol
A=88-383 C host cell nucleus
A=88-383 C nuclear chromatin
A=88-383 C nucleoplasm
A=88-383 C nucleus
A=88-383 C protein-containing complex
A=88-383 C transcription repressor complex
A=88-383 F chromatin binding
A=88-383 F DNA binding
A=88-383 F DNA-binding transcription factor activity, RNA polymerase II-specific
A=88-383 F identical protein binding
A=88-383 F protein kinase binding
A=88-383 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A=88-383 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A=88-383 P antigen processing and presentation
A=88-383 P cellular response to osmotic stress
A=88-383 P circadian regulation of gene expression
A=88-383 P I-kappaB kinase/NF-kappaB signaling
A=88-383 P inflammatory response
A=88-383 P innate immune response
A=88-383 P lymphocyte differentiation
A=88-383 P myeloid dendritic cell differentiation
A=88-383 P negative regulation of interferon-beta production
A=88-383 P negative regulation of transcription by RNA polymerase II
A=88-383 P negative regulation of transcription, DNA-templated
A=88-383 P NIK/NF-kappaB signaling
A=88-383 P positive regulation of gene expression
A=88-383 P positive regulation of transcription by RNA polymerase II
A=88-383 P response to cytokine
A=88-383 P T-helper 1 cell differentiation
A=88-383 P T-helper 1 type immune response
B=37-329 C Bcl3/NF-kappaB2 complex
B=37-329 C cytoplasm
B=37-329 C cytosol
B=37-329 C host cell nucleus
B=37-329 C nuclear chromatin
B=37-329 C nucleoplasm
B=37-329 C nucleus
B=37-329 F DNA-binding transcription activator activity, RNA polymerase II-specific
B=37-329 F DNA-binding transcription factor activity
B=37-329 F DNA-binding transcription factor activity, RNA polymerase II-specific
B=37-329 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
B=37-329 F sequence-specific double-stranded DNA binding
B=37-329 P aging
B=37-329 P extracellular matrix organization
B=37-329 P follicular dendritic cell differentiation
B=37-329 P germinal center formation
B=37-329 P NIK/NF-kappaB signaling
B=37-329 P positive regulation of NF-kappaB transcription factor activity
B=37-329 P positive regulation of transcription by RNA polymerase II
B=37-329 P positive regulation of type I interferon production
B=37-329 P regulation of transcription, DNA-templated
B=37-329 P response to cytokine
B=37-329 P response to lipopolysaccharide
B=37-329 P rhythmic process
B=37-329 P spleen development
Sequences
Download file with secondary structure created by Stride  
3do7.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
3do7.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text