General information
PDB ID 3EQ3
Title MODEL OF TRNA(TRP)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM
PDB header RIBOSOMAL PROTEIN/RNA
Date 2008-09-30
Experimental method ELECTRON MICROSCOPY
Resolution (A) 9
Kind rna
Organism ESCHERICHIA COLI K12
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3eq3.pdb XLI YACBDE 0
Biounits:
3eq3.pdb1.pdb XLI YACBDE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L11_N Domain P0A7J7_2-67 1.2e-29 1 No_clan I 8 66   
Ribosomal_L11 Domain P0A7J7_72-140 4.4e-24 1 No_clan I 71 139   
GTP_EFTU Domain P0CE47_10-202 5.3e-58 1 CL0023 X 9 201   
GTP_EFTU_D3 Domain P0CE47_298-393 9.7e-34 1 No_clan X 297 392   
GTP_EFTU_D2 Domain P0CE47_225-294 7.9e-18 1 CL0575 X 224 293   
Ribosom_S12_S23 Family P0A7S3_12-123 4.9e-43 1 CL0021 L 11 122   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
I=2-142 C cytosolic large ribosomal subunit
I=2-142 P translational termination
I=2-142 P stringent response
L=2-124 C cytosolic small ribosomal subunit
L=2-124 F misfolded RNA binding
L=2-124 F tRNA binding
L=2-124 F rRNA binding
L=2-124 F structural constituent of ribosome
L=2-124 P positive regulation of RNA splicing
L=2-124 P RNA folding
L=2-124 P translation
L=2-124 P Group I intron splicing
X=2-393 C cytoplasm
X=2-393 C plasma membrane
X=2-393 F GTP binding
X=2-393 F translation elongation factor activity
X=2-393 F GTPase activity
X=2-393 P response to antibiotic
X=2-393 P GTP catabolic process
Sequences
Download file with secondary structure created by Stride  
3eq3.pdb1.pdb:   [ download sequences in FASTA format ]
I (protein): 
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L (protein): 
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X (protein): 
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A (rna): 
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B (rna): 
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C (rna): 
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D (rna): 
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E (rna): 
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Y (rna): 
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