General information
PDB ID 3F8J
Title MOUSE UHRF1 SRA DOMAIN BOUND WITH HEMI-METHYLATED CPG, CRYSTAL STRUCTURE IN SPACE GROUP C222(1)
PDB header LIGASE/DNA
Date 2008-11-12
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.99
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3f8j.pdb B FG 0
Biounits:
3f8j.pdb1.pdb B FG 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SAD_SRA Domain Q8VDF2_422-590 9.1e-59 1 CL0178 B 422 590 FG  H-Bb S-Bb L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B=417-628 C cytoplasmic vesicle
B=417-628 C euchromatin
B=417-628 C heterochromatin
B=417-628 C nuclear chromatin
B=417-628 C nuclear heterochromatin
B=417-628 C nuclear matrix
B=417-628 C nucleoplasm
B=417-628 C nucleus
B=417-628 C plasma membrane
B=417-628 C replication fork
B=417-628 F cis-regulatory region sequence-specific DNA binding
B=417-628 F hemi-methylated DNA-binding
B=417-628 F histone binding
B=417-628 F identical protein binding
B=417-628 F methyl-CpG binding
B=417-628 F methylated histone binding
B=417-628 F nucleosomal histone binding
B=417-628 F ubiquitin protein ligase activity
B=417-628 F ubiquitin-protein transferase activity
B=417-628 F zinc ion binding
B=417-628 P cell cycle
B=417-628 P DNA repair
B=417-628 P histone monoubiquitination
B=417-628 P histone ubiquitination
B=417-628 P maintenance of DNA methylation
B=417-628 P negative regulation of transcription by RNA polymerase II
B=417-628 P positive regulation of cellular protein metabolic process
B=417-628 P protein autoubiquitination
B=417-628 P protein ubiquitination
B=417-628 P regulation of epithelial cell proliferation
B=417-628 P ubiquitin-dependent protein catabolic process
Sequences
Download file with secondary structure created by Stride  
3f8j.pdb1.pdb:   [ download sequences in FASTA format ]
F (dna): 
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G (dna): 
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B (protein): 
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