General information
PDB ID 3FDE
Title MOUSE UHRF1 SRA DOMAIN BOUND WITH HEMI-METHYLATED CPG DNA, CRYSTAL STRUCTURE IN SPACE GROUP C222(1) AT 1.4 A RESOLUTION
PDB header LIGASE
Date 2008-11-25
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.41
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3fde.pdb AB DECF 0
Biounits:
3fde.pdb1.pdb A DE 1
3fde.pdb2.pdb B CF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SAD_SRA Domain Q8VDF2_422-590 9.6e-59 1 CL0178 A 421 589 DE  H-Bb S-Bb L-Bb L-Mj L-Mn 
SAD_SRA Domain Q8VDF2_422-590 9.1e-59 1 CL0178 B 422 590 CF  H-Bb S-Bb L-Bb L-Mj L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=419-628 C cytoplasmic vesicle
A/B=419-628 C euchromatin
A/B=419-628 C heterochromatin
A/B=419-628 C nuclear chromatin
A/B=419-628 C nuclear heterochromatin
A/B=419-628 C nuclear matrix
A/B=419-628 C nucleoplasm
A/B=419-628 C nucleus
A/B=419-628 C plasma membrane
A/B=419-628 C replication fork
A/B=419-628 F cis-regulatory region sequence-specific DNA binding
A/B=419-628 F hemi-methylated DNA-binding
A/B=419-628 F histone binding
A/B=419-628 F identical protein binding
A/B=419-628 F methyl-CpG binding
A/B=419-628 F methylated histone binding
A/B=419-628 F nucleosomal histone binding
A/B=419-628 F ubiquitin protein ligase activity
A/B=419-628 F ubiquitin-protein transferase activity
A/B=419-628 F zinc ion binding
A/B=419-628 P cell cycle
A/B=419-628 P DNA repair
A/B=419-628 P histone monoubiquitination
A/B=419-628 P histone ubiquitination
A/B=419-628 P maintenance of DNA methylation
A/B=419-628 P negative regulation of transcription by RNA polymerase II
A/B=419-628 P positive regulation of cellular protein metabolic process
A/B=419-628 P protein autoubiquitination
A/B=419-628 P protein ubiquitination
A/B=419-628 P regulation of epithelial cell proliferation
A/B=419-628 P ubiquitin-dependent protein catabolic process
Sequences
Download file with secondary structure created by Stride  
3fde.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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3fde.pdb2.pdb:   [ download sequences in FASTA format ]
C (dna): 
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F (dna): 
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B (protein): 
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