General information
PDB ID 3FOF
Title STRUCTURAL INSIGHT INTO THE QUINOLONE-DNA CLEAVAGE COMPLEX OF TYPE IIA TOPOISOMERASES
PDB header ISOMERASE/DNA
Date 2008-12-30
Experimental method X-RAY DIFFRACTION
Resolution (A) 4
Kind dna
Organism STREPTOCOCCUS PNEUMONIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3fof.pdb ABCD EFGH 0
Biounits:
3fof.pdb1.pdb ABCD EFGH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_topoisoIV Family P72525_25-265 1.8e-85 1 No_clan A 28 311 E  H-Mj L-Bb 
DNA_topoisoIV Family P72525_260-422 7.2e-28 1 No_clan A 300 468   
DNA_topoisoIV Family P72525_28-468 5.5e-110 1 No_clan B 28 468 GH  H-Bb H-Mj L-Bb 
DNA_gyraseB_C Family Q59961_573-634 2.4e-26 1 No_clan C 567 634   
Toprim Family Q59961_428-540 1.5e-12 1 CL0413 C 428 540 FH  L-Bb 
DNA_gyraseB_C Family Q59961_573-634 4.3e-30 1 No_clan D 567 634   
Toprim Family Q59961_428-540 6.6e-11 1 CL0413 D 428 540 FH  L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-488 C chromosome
A/B=1-488 C extrinsic component of plasma membrane
A/B=1-488 F ATP binding
A/B=1-488 F DNA binding
A/B=1-488 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A/B=1-488 P chromosome segregation
A/B=1-488 P DNA topological change
C/D=404-647 C chromosome
C/D=404-647 F ATP binding
C/D=404-647 F DNA binding
C/D=404-647 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
C/D=404-647 F metal ion binding
C/D=404-647 P chromosome segregation
C/D=404-647 P DNA topological change
Sequences
Download file with secondary structure created by Stride  
3fof.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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