General information
PDB ID 3G9I
Title GR DNA BINDING DOMAIN: PAL COMPLEX-35
PDB header TRANSCRIPTION/DNA
Date 2009-02-13
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.85
Kind dna
Organism RATTUS NORVEGICUS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3g9i.pdb AB DC 0
Biounits:
3g9i.pdb1.pdb ABEH DCFG 0
3g9i.pdb2.pdb AB DC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-C4 Domain P06536_438-507 7e-30 1 CL0167 A 438 507 CD  H-Bb H-Mj L-Bb 
zf-C4 Domain P06536_438-507 7e-30 1 CL0167 A 438 507 CD  H-Bb H-Mj L-Bb 
zf-C4 Domain P06536_438-507 7e-30 1 CL0167 A 438 507 CD  H-Bb H-Mj L-Bb 
zf-C4 Domain P06536_438-507 7e-30 1 CL0167 A 438 507 CD  H-Bb H-Mj L-Bb 
zf-C4 Domain P06536_438-507 7.7e-30 1 CL0167 B 438 507 CD  H-Bb H-Mj L-Bb 
zf-C4 Domain P06536_438-507 7.7e-30 1 CL0167 B 438 507 CD  H-Bb H-Mj L-Bb 
zf-C4 Domain P06536_438-507 7.7e-30 1 CL0167 B 438 507 CDF  H-Bb H-Mj L-Bb 
zf-C4 Domain P06536_438-507 7.7e-30 1 CL0167 B 438 507 CDF  H-Bb H-Mj L-Bb 
zf-C4 Domain 7e-30 1 CL0167 E 438 507 FG
zf-C4 Domain 7.7e-30 1 CL0167 H 438 507 CFG
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=440-525 C nucleus
A/B=440-525 C membrane
A/B=440-525 C cytosol
A/B=440-525 C protein complex
A/B=440-525 C cytoplasm
A/B=440-525 C synaptosome
A/B=440-525 C postsynaptic density
A/B=440-525 F hormone binding
A/B=440-525 F chromatin binding
A/B=440-525 F glucocorticoid receptor activity
A/B=440-525 F steroid binding
A/B=440-525 F zinc ion binding
A/B=440-525 F transcription coactivator activity
A/B=440-525 F sequence-specific DNA binding transcription factor activity
A/B=440-525 F RNA polymerase II regulatory region DNA binding
A/B=440-525 F sequence-specific DNA binding
A/B=440-525 F double-stranded DNA binding
A/B=440-525 P transcription, DNA-dependent
A/B=440-525 P response to inactivity
A/B=440-525 P glucocorticoid metabolic process
A/B=440-525 P regulation of gluconeogenesis
A/B=440-525 P response to corticosterone stimulus
A/B=440-525 P negative regulation of vascular permeability
A/B=440-525 P adrenal gland development
A/B=440-525 P lung development
A/B=440-525 P androgen metabolic process
A/B=440-525 P anti-apoptosis
A/B=440-525 P brain development
A/B=440-525 P aging
A/B=440-525 P circadian rhythm
A/B=440-525 P mammary gland duct morphogenesis
A/B=440-525 P response to calcium ion
A/B=440-525 P regulation of glucose metabolic process
A/B=440-525 P positive regulation of glucocorticoid receptor signaling pathway
A/B=440-525 P response to activity
A/B=440-525 P response to electrical stimulus
A/B=440-525 P regulation of glucocorticoid biosynthetic process
A/B=440-525 P response to insulin stimulus
A/B=440-525 P response to mercury ion
A/B=440-525 P positive regulation of neuron apoptotic process
A/B=440-525 P response to radiation
A/B=440-525 P muscle atrophy
A/B=440-525 P cellular response to magnesium ion
A/B=440-525 P response to arsenic-containing substance
A/B=440-525 P positive regulation of glutamate secretion
A/B=440-525 P cellular response to dexamethasone stimulus
A/B=440-525 P negative regulation of transforming growth factor beta receptor signaling pathway
A/B=440-525 P positive regulation of transcription from RNA polymerase II promoter
A/B=440-525 P regulation of cell proliferation
A/B=440-525 P chromatin-mediated maintenance of transcription
Sequences
Download file with secondary structure created by Stride  
3g9i.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
G (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
3g9i.pdb2.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2020

text