General information
PDB ID 3HOU
Title COMPLETE RNA POLYMERASE II ELONGATION COMPLEX I WITH A T-U MISMATCH
PDB header TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID
Date 2009-06-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.2
Kind hybrid
Organism SACCHAROMYCES CEREVISIAE
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3hou.pdb ABCDEFGHIJKLMNOPQRSTUVWX 1245 36 0
Biounits:
3hou.pdb1.pdb ABCDEFGHIJKL 12 3 1
3hou.pdb2.pdb MNOPQRSTUVWX 45 6 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_1 Domain P04050_11-340 3.4e-114 1 No_clan A 11 340 1   
RNA_pol_Rpb1_5 Domain P04050_807-1397 1.6e-93 1 No_clan A 807 1397 1   
RNA_pol_Rpb1_2 Domain P04050_342-507 1.7e-77 1 No_clan A 342 507   
RNA_pol_Rpb1_6 Domain P04050_873-1056 2.4e-63 1 No_clan A 873 1056   
RNA_pol_Rpb1_3 Domain P04050_510-669 7.8e-47 1 No_clan A 510 669   
RNA_pol_Rpb1_7 Domain P04050_1141-1274 3.3e-37 1 No_clan A 1141 1274   
RNA_pol_Rpb1_4 Domain P04050_693-800 5.3e-35 1 No_clan A 693 800   
RNA_pol_Rpb2_6 Domain P08518_752-1124 6.6e-123 1 CL0410 B 752 1124   
RNA_pol_Rpb2_2 Domain P08518_219-407 1.9e-48 1 No_clan B 219 407   
RNA_pol_Rpb2_7 Domain P08518_1126-1219 1.7e-33 1 No_clan B 1126 1219   
RNA_pol_Rpb2_4 Domain P08518_580-641 1.5e-25 1 No_clan B 580 641   
RNA_pol_Rpb2_3 Domain P08518_481-545 3.6e-20 1 No_clan B 481 545   
RNA_pol_Rpb2_5 Domain P08518_681-745 1.3e-19 1 No_clan B 681 745   
RNA_pol_A_bac Domain P16370_49-171 7.3e-32 1 No_clan C 49 171   
RNA_pol_L Domain P16370_19-255 6.6e-19 1 CL0509 C 19 255   
RNA_pol_Rpb5_C Domain P20434_142-214 1.6e-31 1 No_clan E 142 214   
RNA_pol_Rpb5_N Domain P20434_6-100 1.1e-29 1 CL0236 E 6 100   
S1 Domain P34087_80-161 6.2e-18 1 CL0021 G 80 161   
SHS2_Rpb7-N Domain P34087_8-79 2.6e-16 1 CL0319 G 8 79   
RNA_POL_M_15KD Domain P27999_4-41 1.2e-17 1 CL0167 I 4 41   
TFIIS_C Domain P27999_73-111 0.000000000000013 1 CL0167 I 73 111   
RNA_pol_N Domain P22139_1-60 5.4e-30 1 No_clan J 1 60   
RNA_pol_L_2 Domain P38902_30-104 1.6e-24 1 CL0509 K 30 104   
DNA_RNApol_7kD Domain P40422_29-60 1.9e-16 1 CL0167 L 29 60   
RNA_pol_Rpb1_1 Domain P04050_11-340 3.4e-114 1 No_clan M 11 340 4   
RNA_pol_Rpb1_5 Domain P04050_807-1397 1.6e-93 1 No_clan M 807 1397 4   
RNA_pol_Rpb1_2 Domain P04050_342-507 1.7e-77 1 No_clan M 342 507   
RNA_pol_Rpb1_6 Domain P04050_873-1056 2.4e-63 1 No_clan M 873 1056   
RNA_pol_Rpb1_3 Domain P04050_510-669 7.8e-47 1 No_clan M 510 669   
RNA_pol_Rpb1_7 Domain P04050_1141-1274 3.3e-37 1 No_clan M 1141 1274   
RNA_pol_Rpb1_4 Domain P04050_693-800 5.3e-35 1 No_clan M 693 800   
RNA_pol_Rpb2_6 Domain P08518_752-1124 6.6e-123 1 CL0410 N 752 1124   
RNA_pol_Rpb2_2 Domain P08518_219-407 1.9e-48 1 No_clan N 219 407   
RNA_pol_Rpb2_7 Domain P08518_1126-1219 1.7e-33 1 No_clan N 1126 1219   
RNA_pol_Rpb2_4 Domain P08518_580-641 1.5e-25 1 No_clan N 580 641   
RNA_pol_Rpb2_3 Domain P08518_481-545 3.6e-20 1 No_clan N 481 545   
RNA_pol_Rpb2_5 Domain P08518_681-745 1.3e-19 1 No_clan N 681 745   
RNA_pol_A_bac Domain P16370_49-171 7.3e-32 1 No_clan O 49 171   
RNA_pol_L Domain P16370_19-255 6.6e-19 1 CL0509 O 19 255   
RNA_pol_Rpb5_C Domain P20434_142-214 1.6e-31 1 No_clan Q 142 214   
RNA_pol_Rpb5_N Domain P20434_6-100 1.1e-29 1 CL0236 Q 6 100   
S1 Domain P34087_80-161 6.2e-18 1 CL0021 S 80 161   
SHS2_Rpb7-N Domain P34087_8-79 2.6e-16 1 CL0319 S 8 79   
RNA_POL_M_15KD Domain P27999_4-41 1.2e-17 1 CL0167 U 4 41   
TFIIS_C Domain P27999_73-111 0.000000000000013 1 CL0167 U 73 111   
RNA_pol_N Domain P22139_1-60 5.4e-30 1 No_clan V 1 60   
RNA_pol_L_2 Domain P38902_30-104 1.6e-24 1 CL0509 W 30 104   
DNA_RNApol_7kD Domain P40422_29-60 1.9e-16 1 CL0167 X 29 60   
RNA_pol_Rpb2_1 Family P08518_42-455 1e-54 1 No_clan B 42 455   
RNA_pol_Rpb4 Family P20433_49-218 8.6e-39 1 CL0426 D 49 218   
RNA_pol_Rpb6 Family P20435_79-132 8e-18 1 No_clan F 79 132   
RNA_pol_Rpb8 Family P20436_7-146 9.4e-43 1 CL0021 H 7 146   
RNA_pol_Rpb2_1 Family P08518_42-455 1e-54 1 No_clan N 42 455   
RNA_pol_Rpb4 Family P20433_49-218 8.6e-39 1 CL0426 P 49 218   
RNA_pol_Rpb6 Family P20435_79-132 8e-18 1 No_clan R 79 132   
RNA_pol_Rpb8 Family P20436_7-146 9.4e-43 1 CL0021 T 7 146   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B/N=1-1224 C mitochondrion
B/N=1-1224 F ribonucleoside binding
C/O=1-318 P termination of RNA polymerase II transcription
D/P=1-221 F nucleotide binding
D/P=1-221 P recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
D/P=1-221 P DNA repair
D/P=1-221 P mRNA export from nucleus in response to heat stress
D/P=1-221 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
E/Q=1-215 P tRNA transcription from RNA polymerase III promoter
F/R=1-155 C cytoplasm
G/S=1-171 C cytoplasmic mRNA processing body
G/S=1-171 F single-stranded DNA binding
G/S=1-171 F single-stranded RNA binding
G/S=1-171 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
G/S=1-171 P positive regulation of translational initiation
G/S=1-171 P nuclear-transcribed mRNA catabolic process, exonucleolytic
I/U=1-122 F zinc ion binding
I/U=1-122 P transcription-coupled nucleotide-excision repair
I/U=1-122 P maintenance of transcriptional fidelity during DNA-dependent transcription elongation from RNA polymerase II promoter
I/U=1-122 P transcription initiation from RNA polymerase II promoter
L/X=1-70 C DNA-directed RNA polymerase I complex
L/X=1-70 C DNA-directed RNA polymerase II, core complex
L/X=1-70 C DNA-directed RNA polymerase III complex
L/X=1-70 F DNA-directed RNA polymerase activity
L/X=1-70 F DNA binding
L/X=1-70 F metal ion binding
L/X=1-70 P transcription from RNA polymerase I promoter
L/X=1-70 P transcription from RNA polymerase III promoter
L/X=1-70 P transcription from RNA polymerase II promoter
Sequences
Download file with secondary structure created by Stride  
3hou.pdb1.pdb:   [ download sequences in FASTA format ]
1 (dna): 
Click "SHOW" for view sequence
2 (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
3 (rna): 
Click "SHOW" for view sequence
3hou.pdb2.pdb:   [ download sequences in FASTA format ]
4 (dna): 
Click "SHOW" for view sequence
5 (dna): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
Q (protein): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
T (protein): 
Click "SHOW" for view sequence
U (protein): 
Click "SHOW" for view sequence
V (protein): 
Click "SHOW" for view sequence
W (protein): 
Click "SHOW" for view sequence
X (protein): 
Click "SHOW" for view sequence
6 (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text