General information
PDB ID 3IRR
Title CRYSTAL STRUCTURE OF A Z-Z JUNCTION (WITH HEPES INTERCALATING)
PDB header HYDROLASE/DNA
Date 2009-08-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.65
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3irr.pdb ABCD FG 0
Biounits:
3irr.pdb1.pdb ABCD FG 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
z-alpha Domain P55265_140-201 2.2e-28 1 CL0123 A 137 198 G  H-Bb H-Mj S-Bb 
z-alpha Domain P55265_140-201 2.1e-28 1 CL0123 B 137 198 G  H-Bb H-Mj S-Bb 
z-alpha Domain P55265_140-201 2.1e-28 1 CL0123 C 137 198 F  H-Bb H-Mj S-Bb 
z-alpha Domain P55265_140-201 1.3e-28 1 CL0123 D 137 199 F  H-Bb H-Mj H-Mn S-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=140-202 C cytoplasm
A/B/C/D=140-202 C membrane
A/B/C/D=140-202 C nucleolus
A/B/C/D=140-202 C nucleoplasm
A/B/C/D=140-202 C nucleus
A/B/C/D=140-202 C supraspliceosomal complex
A/B/C/D=140-202 F DNA binding
A/B/C/D=140-202 F double-stranded RNA adenosine deaminase activity
A/B/C/D=140-202 F double-stranded RNA binding
A/B/C/D=140-202 F metal ion binding
A/B/C/D=140-202 F RNA binding
A/B/C/D=140-202 F tRNA-specific adenosine deaminase activity
A/B/C/D=140-202 P adenosine to inosine editing
A/B/C/D=140-202 P base conversion or substitution editing
A/B/C/D=140-202 P cellular response to virus
A/B/C/D=140-202 P defense response to virus
A/B/C/D=140-202 P definitive hemopoiesis
A/B/C/D=140-202 P erythrocyte differentiation
A/B/C/D=140-202 P hematopoietic progenitor cell differentiation
A/B/C/D=140-202 P hematopoietic stem cell homeostasis
A/B/C/D=140-202 P innate immune response
A/B/C/D=140-202 P miRNA loading onto RISC involved in gene silencing by miRNA
A/B/C/D=140-202 P mRNA processing
A/B/C/D=140-202 P negative regulation of apoptotic process
A/B/C/D=140-202 P negative regulation of protein kinase activity by regulation of protein phosphorylation
A/B/C/D=140-202 P negative regulation of RNA interference
A/B/C/D=140-202 P negative regulation of type I interferon-mediated signaling pathway
A/B/C/D=140-202 P osteoblast differentiation
A/B/C/D=140-202 P positive regulation of viral genome replication
A/B/C/D=140-202 P pre-miRNA processing
A/B/C/D=140-202 P protein export from nucleus
A/B/C/D=140-202 P protein import into nucleus
A/B/C/D=140-202 P response to interferon-alpha
A/B/C/D=140-202 P response to virus
A/B/C/D=140-202 P RNA processing
A/B/C/D=140-202 P somatic diversification of immune receptors via somatic mutation
A/B/C/D=140-202 P type I interferon signaling pathway
Sequences
Download file with secondary structure created by Stride  
3irr.pdb1.pdb:   [ download sequences in FASTA format ]
F (dna): 
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G (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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