General information
PDB ID 3J16
Title MODELS OF RIBOSOME-BOUND DOM34P AND RLI1P AND THEIR RIBOSOMAL BINDING PARTNERS
PDB header RIBOSOME
Date 2011-12-12
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7.2
Kind rna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3j16.pdb ABFEGCHID JKL 0
Biounits:
3j16.pdb1.pdb ABFEGCHID JKL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
eRF1_2 Domain P33309_141-274 8.1e-32 1 CL0267 A 141 274 KL   
eRF1_3 Domain P33309_277-376 1.1e-24 1 CL0101 A 277 376 K   
eRF1_1 Domain P33309_1-134 4.5e-22 1 No_clan A 1 134 JK   
ABC_tran Domain Q03195_368-496 7.4e-17 1 CL0023 B 368 496   
ABC_tran Domain Q03195_99-250 7.9e-16 1 CL0023 B 99 250 J   
Fer4 Domain Q03195_48-71 0.00000032 1 CL0344 B 48 71   
Ribosomal_L6 Domain P05738_12-85 1.5e-16 1 No_clan F 12 85   
Ribosomal_L6 Domain P05738_97-178 0.000000000000049 1 No_clan F 97 178 K   
Ribosomal_L11_N Domain P0CX53_7-69 1.2e-20 1 No_clan H 13 69 K   
Ribosomal_L11 Domain P0CX53_73-143 6.2e-16 1 No_clan H 74 143 K   
Ribosomal_L14 Domain P0CX41_17-137 2.3e-33 1 No_clan I 17 137 K   
RLI Family Q03195_6-37 0.00000000000002 1 CL0344 B 6 37   
Ribosomal_S6e Family P0CX37_1-126 6e-58 1 No_clan C 1 126 J   
Ribosomal_S24e Family P0CX31_24-102 6.5e-35 1 No_clan D 24 102   
Ribosomal_S30 Family P0CX33_7-61 3.5e-25 1 No_clan E 7 61 J   
Ribosomal_L10 Family P05317_3-105 6.4e-25 1 No_clan G 3 105   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-386 C cytoplasm
A=1-386 F endoribonuclease activity
A=1-386 F metal ion binding
A=1-386 P nonfunctional rRNA decay
A=1-386 P regulation of translation
A=1-386 P mitosis
A=1-386 P ribosome disassembly
A=1-386 P cell division
A=1-386 P nuclear-transcribed mRNA catabolic process, no-go decay
A=1-386 P nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay
A=1-386 P meiosis
A=1-386 P translation
B=1-608 C nucleus
B=1-608 C cytosolic ribosome
B=1-608 F ATPase activity
B=1-608 F translation initiation factor activity
B=1-608 F iron ion binding
B=1-608 F electron carrier activity
B=1-608 F ATP binding
B=1-608 F iron-sulfur cluster binding
B=1-608 P translational termination
B=1-608 P ribosomal large subunit biogenesis
B=1-608 P ribosomal subunit export from nucleus
B=1-608 P translational initiation
B=1-608 P rRNA processing
C=1-236 C 90S preribosome
C=1-236 C small-subunit processome
D=1-135 C cytosolic small ribosomal subunit
D=1-135 C mitochondrion
D=1-135 C nucleolus
D=1-135 F nucleotide binding
D=1-135 P translational elongation
D=1-135 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
E=1-63 C cytoplasmic stress granule
F=1-191 C cytosolic large ribosomal subunit
F=1-191 F rRNA binding
F=1-191 F structural constituent of ribosome
F=1-191 P cytoplasmic translation
G=1-312 F LSU rRNA binding
H=1-165 F RNA binding
H=1-165 P ribosomal large subunit assembly
Sequences
Download file with secondary structure created by Stride  
3j16.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (rna): 
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K (rna): 
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L (rna): 
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