General information
PDB ID 3J5L
Title STRUCTURE OF THE E. COLI 50S SUBUNIT WITH ERMBL NASCENT CHAIN
PDB header RIBOSOME/ANTIBIOTIC
Date 2013-10-23
Experimental method ELECTRON MICROSCOPY
Resolution (A) 6.6
Kind rna
Organism ESCHERICHIA COLI, STREPTOCOCCUS SANGUINIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3j5l.pdb 012346CDEFGHIJKLMNOPQRSTUVWXYZ 57AB 0
Biounits:
3j5l.pdb1.pdb 012346CDEFGHIJKLMNOPQRSTUVWXYZ 57AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L36 Domain P0A7Q6_1-38 2.3e-20 1 No_clan 4 1 38 A   
Ribosomal_L2_C Domain P60422_125-249 9.6e-56 1 CL0107 C 124 248 A   
Ribosomal_L2 Domain P60422_42-118 7.8e-34 1 CL0021 C 41 117 A   
Ribosomal_L5_C Domain P62399_84-177 5.3e-41 1 No_clan F 83 176 AB   
Ribosomal_L5 Domain P62399_24-80 9.7e-29 1 CL0652 F 23 79 AB   
Ribosomal_L6 Domain P0AG55_90-165 7e-19 1 No_clan G 89 164 A   
Ribosomal_L6 Domain P0AG55_11-82 1e-18 1 No_clan G 10 81 A   
Ribosomal_L9_N Domain P0A7R1_1-47 2.4e-23 1 No_clan H 1 47 A   
Ribosomal_L11_N Domain P0A7J7_2-67 1.2e-29 1 No_clan I 8 66 A   
Ribosomal_L11 Domain P0A7J7_72-140 4.4e-24 1 No_clan I 71 139 A   
Ribosomal_L14 Domain P0ADY3_2-122 1.9e-54 1 No_clan K 1 122 A   
Ribosomal_L22 Domain P61175_5-108 7.6e-38 1 No_clan S 5 108 A   
Ribosomal_L25p Domain P68919_4-91 2.7e-25 1 No_clan V 4 91 B   
Ribosomal_L30 Domain P0AG51_5-55 2.7e-19 1 No_clan Z 4 54 A   
Ribosomal_L32p Family P0A7N4_2-57 1.8e-19 1 CL0167 0 1 56 A   
Ribosomal_L33 Family P0A7N9_7-53 6.2e-19 1 CL0167 1 6 52 A   
Ribosomal_L34 Family P0A7P5_1-44 1.7e-24 1 No_clan 2 1 44 A   
Ribosomal_L35p Family P0A7Q1_2-62 2.4e-22 1 No_clan 3 1 61 A   
Ribosomal_L3 Family P60438_4-185 0.00000000000001 1 CL0575 D 4 185 A   
Ribosomal_L4 Family P60723_12-199 3.1e-64 1 No_clan E 12 199 A   
Ribosomal_L13 Family P0AA10_14-138 5e-57 1 No_clan J 14 138 A   
Ribosomal_L27A Family P02413_27-144 3.3e-32 1 CL0588 L 27 144 A   
Ribosomal_L16 Family P0ADY7_4-131 2.8e-47 1 No_clan M 4 131 AB   
Ribosomal_L17 Family P0AG44_20-116 1.1e-34 1 No_clan N 20 116 A   
Ribosomal_L18p Family P0C018_1-117 2e-43 1 CL0267 O 2 117 AB   
Ribosomal_L19 Family P0A7K6_3-113 4.4e-50 1 CL0107 P 2 112 A   
Ribosomal_L20 Family P0A7L3_3-109 5.1e-49 1 No_clan Q 2 108 A   
Ribosomal_L21p Family P0AG48_1-101 1.3e-37 1 No_clan R 1 101 A   
Ribosomal_L23 Family P0ADZ0_9-95 4.3e-30 1 No_clan T 9 93 A   
ribosomal_L24 Family P60624_39-103 1.6e-23 1 No_clan U 38 102 A   
KOW Family P60624_7-37 0.000074 1 CL0107 U 6 36 A   
Ribosomal_L27 Family P0A7L8_7-82 8.9e-36 1 No_clan W 6 81 A   
Ribosomal_L28 Family P0A7M2_3-62 1.8e-25 1 No_clan X 2 61 A   
Ribosomal_L29 Family P0A7M6_4-60 6.4e-23 1 CL0346 Y 4 60 A   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
3j5l.pdb1.pdb:   [ download sequences in FASTA format ]
0 (protein): 
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1 (protein): 
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2 (protein): 
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3 (protein): 
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4 (protein): 
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6 (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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5 (rna): 
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7 (rna): 
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A (rna): 
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B (rna): 
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