General information
PDB ID 3J7A
Title CRYO-EM STRUCTURE OF THE PLASMODIUM FALCIPARUM 80S RIBOSOME BOUND TO THE ANTI-PROTOZOAN DRUG EMETINE, SMALL SUBUNIT
PDB header RIBOSOME/INHIBITOR
Date 2014-06-03
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.2
Kind rna
Organism PLASMODIUM FALCIPARUM
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3j7a.pdb BCDEFGHIJKLMNOPQRSTUVWXYZ123456 A7 0
Biounits:
3j7a.pdb1.pdb BCDEFGHIJKLMNOPQRSTUVWXYZ123456 A7 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S3_C Domain Q8IKH8_106-189 1.5e-24 1 No_clan D 106 189 A   
S4 Domain Q8I3R0_107-153 3.1e-11 1 CL0492 E 107 153 A   
RS4NT Domain Q8IIU8_3-39 2e-18 1 No_clan F 3 39 A   
S4 Domain 0.00062 0 CL0492 F 42 90 A
Ribosomal_S5 Domain Q8IL02_88-152 2.2e-31 1 CL0196 G 88 152 A   
Ribosomal_S5_C Domain Q8IL02_171-242 9.2e-23 1 CL0329 G 171 242 A   
Ribosomal_S7 Domain Q8IBN5_42-195 5.4e-31 1 No_clan I 42 195 A7   
Ribosomal_S8 Domain O77395_5-130 8.7e-21 1 No_clan K 5 130 A   
S10_plectin Domain Q8IBQ5_14-89 2.4e-34 1 No_clan O 14 89 A   
Ribosomal_L7Ae Domain O97249_23-119 2.2e-21 1 CL0101 R 23 128   
Ribosomal_S13_N Domain Q8IDB0_3-60 5.6e-27 1 No_clan U 3 60 A   
Ribosomal_S15 Domain Q8IDB0_71-148 3.8e-15 1 CL0600 U 71 149 A   
Ribosomal_S17 Domain O77381_76-144 2.7e-27 1 CL0021 V 76 144 A   
Ribosomal_S19 Domain C0H5C2_43-123 2.7e-20 1 No_clan X 43 123 A   
Ribosomal_S24e Family Q8I3R6_24-103 1.2e-30 1 No_clan 1 24 103 A   
Ribosomal_S25 Family Q8ILN8_35-102 2.4e-07 1 CL0123 2 36 102 A   
Ribosomal_S26e Family O96258_2-96 1.5e-47 1 No_clan 3 2 96 A   
Ribosomal_S27e Family Q8IEN2_26-80 1.2e-25 1 CL0167 4 26 80 A   
Ribosomal_S28e Family Q8IKL9_2-66 1.2e-26 1 CL0021 5 2 66 A   
Ribosomal_S30 Family O96269_6-48 1.3e-21 1 No_clan 6 6 48 A   
Ribosomal_S3Ae Family O97313_24-221 9.6e-85 1 No_clan B 24 221 A   
Ribosomal_S2 Family Q8IJD4_17-117 1.2e-16 1 CL0067 C 17 117 A   
Ribosomal_S2 Family Q8IJD4_110-183 7.3e-14 1 CL0067 C 110 183 A   
Ribosomal_S4 Family Q8I3R0_2-106 3.4e-06 1 CL0492 E 3 106 A   
Ribosomal_S4e Family Q8IIU8_95-169 3.9e-29 1 No_clan F 95 169 A   
40S_S4_C Family Q8IIU8_212-258 1.5e-22 1 No_clan F 212 258 A   
KOW Family 9.7e-05 0 CL0107 F 177 220 A
Ribosomal_S6e Family Q8IDR9_1-126 6.2e-56 1 No_clan H 1 126 A   
Ribosomal_S7e Family Q8IET7_5-190 1.4e-60 1 CL0652 J 5 190 A   
Ribosomal_S8e Family Q8IM10_5-200 7.3e-52 1 No_clan L 5 200 A   
Ribosomal_S9 Family Q8IAX5_12-143 9.1e-30 1 CL0329 M 12 143 A   
Ribosomal_S10 Family Q8IK02_21-114 3.8e-25 1 No_clan N 21 114 A   
Ribosomal_S11 Family Q8I3U6_29-147 2e-47 1 CL0267 P 29 147 7A   
Ribosom_S12_S23 Family O97248_31-144 7.7e-51 1 CL0021 Q 31 144 A   
Ribosomal_S13 Family Q8IIA2_16-139 1e-49 1 CL0303 S 16 139 A   
Ribosomal_S14 Family C0H4K8_7-54 1e-14 1 No_clan T 7 54 A   
Ribosomal_S17_N Family O77381_8-74 1.1e-24 1 No_clan V 8 74 A   
Ribosomal_S17e Family Q8I502_3-110 1.4e-44 1 No_clan W 3 108 A   
Ribosomal_S19e Family Q8IFP2_28-165 7.7e-50 1 CL0123 Y 28 165 A   
Ribosomal_S21e Family Q8IHS5_11-79 1.8e-30 1 No_clan Z 11 79 A   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
3j7a.pdb1.pdb:   [ download sequences in FASTA format ]
1 (protein): 
Click "SHOW" for view sequence
2 (protein): 
Click "SHOW" for view sequence
3 (protein): 
Click "SHOW" for view sequence
4 (protein): 
Click "SHOW" for view sequence
5 (protein): 
Click "SHOW" for view sequence
6 (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
Q (protein): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
T (protein): 
Click "SHOW" for view sequence
U (protein): 
Click "SHOW" for view sequence
V (protein): 
Click "SHOW" for view sequence
W (protein): 
Click "SHOW" for view sequence
X (protein): 
Click "SHOW" for view sequence
Y (protein): 
Click "SHOW" for view sequence
Z (protein): 
Click "SHOW" for view sequence
7 (rna): 
Click "SHOW" for view sequence
A (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2020

text