General information
PDB ID 3J7Y
Title STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HUMAN MITOCHONDRIA
PDB header RIBOSOME
Date 2014-08-26
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.4
Kind rna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3j7y.pdb DEFHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijkopqrst AB 0
Biounits:
3j7y.pdb1.pdb DEFHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijkopqrst AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L36 Domain Q9P0J6_67-102 7.4e-17 1 No_clan 4 67 102 A   
PBP Domain Q96DV4_184-312 4.5e-09 1 No_clan 6 175 314   
L51_S25_CI-B8 Domain Q8N983_43-95 3e-11 1 CL0172 b 43 95 A   
Ribosomal_L2 Domain Q5T653_84-165 4.1e-29 1 CL0021 D 84 165 A   
Ribosomal_L2_C Domain Q5T653_177-295 5.4e-29 1 CL0107 D 177 293 A   
Tim44 Domain Q9BRJ2_118-266 6.9e-25 1 CL0051 d 118 266 A   
Img2 Domain Q13405_82-166 1.6e-28 1 No_clan g 82 166 A   
Ribosomal_L9_N Domain Q9BYD2_94-140 3.4e-17 1 No_clan H 94 140 A   
Ribosomal_L50 Domain Q8N5N7_60-155 7.3e-12 1 CL0314 h 60 155 A   
Ribosomal_L11_N Domain Q9Y3B7_18-78 4.4e-23 1 No_clan J 20 78 A   
Ribosomal_L11 Domain Q9Y3B7_83-155 1.6e-22 1 No_clan J 84 155 A   
Ribosomal_L14 Domain Q6P1L8_31-145 1.1e-17 1 No_clan L 31 145 A   
Ribosomal_L22 Domain Q9NWU5_69-173 7.2e-27 1 No_clan T 75 179 A   
Ribosomal_L30 Domain Q8TCC3_67-117 1e-12 1 No_clan Z 67 117 A   
Ribosomal_L32p Family Q9BYC8_79-136 4.6e-09 1 CL0167 0 79 136 A   
RecR Family 0.00023 0 No_clan 0 98 129 A
Ribosomal_L33 Family O75394_14-60 2.6e-07 1 CL0167 1 16 60 A   
Ribosomal_L34 Family Q9BQ48_50-92 2e-19 1 No_clan 2 50 92 A   
Ribosomal_L35p Family Q9NZE8_102-162 3.8e-16 1 No_clan 3 102 162 A   
PDCD9 Family Q9BZE1_190-420 1.8e-07 1 CL0236 5 196 420 A   
MRP-L28 Family Q9NQ50_107-163 4.6e-18 1 No_clan 8 63 119 B   
MRP-L27 Family Q8IXM3_15-127 5.1e-36 1 No_clan 9 15 135 A   
MRP-S32 Family Q9Y6G3_104-142 3.4e-15 1 No_clan a 104 142 A   
Ribosomal_L3 Family 9e-70 1 CL0575 E 114 340 AB
Ribosomal_L4 Family Q9BYD3_80-272 6.7e-55 1 No_clan F 80 272 AB   
MRP-L51 Family Q4U2R6_38-126 2.1e-36 1 No_clan i 38 126 A   
Ribosomal_L10 Family Q7Z7H8_81-171 8.9e-08 1 No_clan I 81 171 A   
Ribosomal_L13 Family Q9BYD1_17-141 1.9e-45 1 No_clan K 17 141 A   
MRP_L53 Family Q96EL3_20-71 4e-16 1 No_clan k 20 71 A   
Ribosomal_L27A Family Q9P015_45-176 2e-28 1 CL0588 M 45 176 A   
Ribosomal_L16 Family Q9NX20_57-190 3.2e-30 1 No_clan N 57 190 A   
MRP-63 Family Q9BQC6_13-101 7.6e-38 1 No_clan o 13 101 A   
Ribosomal_L17 Family Q9NRX2_28-125 3.5e-25 1 No_clan O 28 125 A   
Ribosomal_L18p Family Q9H0U6_59-168 1.7e-08 1 CL0267 P 58 168 AB   
CR6_interact Family Q8TAE8_25-152 3.4e-41 1 No_clan q 25 152 A   
Ribosomal_L19 Family P49406_93-197 7.5e-18 1 CL0107 Q 93 217 A   
Ribosomal_L20 Family Q9BYC9_11-116 1.5e-36 1 No_clan R 11 116 A   
Ribosomal_S18 Family Q9NVS2_77-128 2.2e-16 1 No_clan r 77 128 A   
PDCD9 Family Q9NP92_41-429 9.5e-178 1 CL0236 s 41 429 A   
Ribosomal_L21p Family Q7Z2W9_95-198 7.2e-23 1 No_clan S 95 198 A   
Ribosomal_L23 Family Q16540_28-107 3.7e-14 1 No_clan U 28 107 A   
ribosomal_L24 Family Q96A35_91-154 1.9e-12 1 No_clan V 91 154 A   
KOW Family Q96A35_58-88 2.1e-08 1 CL0107 V 58 88 A   
Ribosomal_L27 Family Q9P0M9_42-114 7.6e-22 1 No_clan W 42 114 A   
Ribosomal_L28 Family Q13084_76-138 7.8e-07 1 No_clan X 76 138 A   
MRP-L47 Family Q9HD33_64-149 3.5e-37 1 CL0346 Y 64 149 A   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
3j7y.pdb1.pdb:   [ download sequences in FASTA format ]
0 (protein): 
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1 (protein): 
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2 (protein): 
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3 (protein): 
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4 (protein): 
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5 (protein): 
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6 (protein): 
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7 (protein): 
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8 (protein): 
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9 (protein): 
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a (protein): 
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b (protein): 
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c (protein): 
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D (protein): 
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e (protein): 
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F (protein): 
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g (protein): 
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H (protein): 
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I (protein): 
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j (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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o (protein): 
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P (protein): 
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q (protein): 
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r (protein): 
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s (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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