General information
PDB ID 3J80
Title CRYOEM STRUCTURE OF 40S-EIF1-EIF1A PREINITIATION COMPLEX
PDB header RIBOSOME
Date 2014-08-28
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.75
Kind rna
Organism KLUYVEROMYCES LACTIS, SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3j80.pdb ABCEGHIJLNOVWXYabeDFKMPQRSTUZcdfghij 2 0
Biounits:
3j80.pdb1.pdb ABCEGHIJLNOVWXYabeDFKMPQRSTUZcdfghij 2 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S5 Domain Q6CKL3_81-145 9.4e-27 1 CL0196 C 81 145 2   
Ribosomal_S5_C Domain Q6CKL3_164-235 1.3e-23 1 CL0329 C 164 235 2   
Ribosomal_S3_C Domain Q6CRK7_105-188 2.9e-22 1 No_clan D 105 188 2   
KH_2 Domain Q6CRK7_20-96 3.4e-11 1 CL0007 D 20 96 2   
RS4NT Domain Q6CWJ2_3-39 2.4e-20 1 No_clan E 3 39 2   
S4 Domain Q6CWJ2_42-90 3.7e-08 1 CL0492 E 42 90 2   
Ribosomal_S7 Domain Q6CRA3_74-227 1.7e-36 1 No_clan F 74 227 2   
Ribosomal_S27 Domain P69061_102-145 8.4e-26 1 CL0167 f 102 145 2   
eIF-1a Domain P38912_32-94 1.6e-20 1 CL0021 i 32 94 2   
SUI1 Domain P32911_23-99 4.4e-27 1 No_clan j 23 99 2   
S4 Domain Q6CM18_107-153 7.7e-13 1 CL0492 J 107 153 2   
S10_plectin Domain Q6CVZ5_3-95 7.9e-42 1 No_clan K 3 95 2   
Ribosomal_S17 Domain Q6CX80_73-141 8.3e-28 1 CL0021 L 73 141 2   
Ribosomal_L7Ae Domain Q6CLU4_19-114 3e-21 1 CL0101 M 19 114 2   
Ribosomal_S13_N Domain Q6CJK0_2-60 1.5e-26 1 No_clan N 2 60 2   
Ribosomal_S15 Domain Q6CJK0_70-148 1.4e-15 1 CL0600 N 70 149 2   
Ribosomal_S19 Domain Q6CKV4_43-128 2e-34 1 No_clan P 43 128 2   
Ribosomal_S8 Domain Q6CW21_5-130 1.4e-23 1 No_clan W 5 130 2   
Ribosomal_S26e Family Q6CS01_2-98 5e-48 1 No_clan a 2 98 2   
Ribosomal_S2 Family Q6CN12_111-183 2.2e-13 1 CL0067 A 111 183 2   
Ribosomal_S2 Family Q6CN12_17-116 2.8e-09 1 CL0067 A 17 116 2   
Ribosomal_S3Ae Family Q6CWD0_20-221 2.4e-89 1 No_clan B 20 221 2   
Ribosomal_S27e Family Q6CNL2_28-82 1.9e-29 1 CL0167 b 28 82 2   
Ribosomal_S28e Family P33285_5-66 7.4e-33 1 CL0021 c 5 66 2   
Ribosomal_S14 Family Q6CPG3_6-56 2.6e-14 1 No_clan d 6 56 2   
Ribosomal_S4e Family Q6CWJ2_95-169 1.1e-37 1 No_clan E 95 169 2   
40S_S4_C Family Q6CWJ2_212-259 9.3e-25 1 No_clan E 212 259 2   
Ribosomal_S30 Family Q6CUH5_9-61 1.3e-24 1 No_clan e 9 61 2   
KOW Family Q6CWJ2_177-211 4.9e-06 1 CL0107 E 177 211 2   
Ribosomal_S6e Family Q6CM04_1-126 2e-58 1 No_clan G 1 126 2   
Ribosomal_S7e Family Q6CTD6_5-187 4.1e-79 1 CL0652 H 5 187 2   
Ribosomal_L41 Family P0CX86_1-25 1.2e-10 1 CL0652 h 1 25 2   
Ribosomal_S8e Family Q6CMG3_2-185 2e-57 1 No_clan I 2 185 2   
Ribosomal_S4 Family Q6CM18_2-128 9.1e-05 1 CL0492 J 3 128 2   
Ribosomal_S17_N Family Q6CX80_8-71 9.6e-33 1 No_clan L 8 71 2   
Ribosomal_S11 Family P27069_15-133 3.9e-46 1 CL0267 O 15 133 2   
Ribosomal_S9 Family Q875N2_11-143 1.6e-32 1 CL0329 Q 11 143 2   
Ribosomal_S17e Family Q6CWU3_2-126 5.1e-54 1 No_clan R 2 122 2   
Ribosomal_S13 Family Q6CWT9_16-144 4e-57 1 CL0303 S 16 144 2   
Ribosomal_S19e Family Q6CXM0_5-142 2.3e-53 1 CL0123 T 5 142 2   
Ribosomal_S10 Family Q6CIM1_20-114 4.1e-24 1 No_clan U 23 117 2   
Ribosomal_S21e Family Q6CXT6_1-80 4.1e-40 1 No_clan V 1 80 2   
Ribosom_S12_S23 Family F2Z602_31-144 1.4e-51 1 CL0021 X 31 144 2   
Ribosomal_S24e Family Q6CU44_24-102 1.7e-35 1 No_clan Y 24 102 2   
Ribosomal_S25 Family Q6CW78_36-104 1.1e-24 1 CL0123 Z 36 104 2   
WD40 Repeat Q6CNI7_194-231 1.3e-08 1 CL0186 g 56 94 2   
WD40 Repeat Q6CNI7_286-321 7e-06 1 CL0186 g 98 136 2   
WD40 Repeat Q6CNI7_286-321 2.3e-05 1 CL0186 g 193 231 2   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
3j80.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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b (protein): 
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c (protein): 
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D (protein): 
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e (protein): 
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f (protein): 
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g (protein): 
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h (protein): 
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i (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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2 (rna): 
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