General information
PDB ID 3J9X
Title A VIRUS THAT INFECTS A HYPERTHERMOPHILE ENCAPSIDATES A-FORM DNA
PDB header VIRUS
Date 2015-03-21
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.8
Kind dna
Organism SULFOLOBUS ISLANDICUS ROD-SHAPED VIRUS 2
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3j9x.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz123456 78 0
Biounits:
3j9x.pdb1.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz123456 78 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan 1 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan 2 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan 3 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan 4 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan 5 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan 6 7 134 78  H-Bb H-Mn 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan a 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan a 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan A 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan A 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan b 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan b 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan B 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan B 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan c 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan c 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan C 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan C 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan d 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan d 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan D 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan D 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan e 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan e 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan E 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan E 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan f 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan f 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan F 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan F 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan g 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan g 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan G 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan G 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan h 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan h 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan H 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan H 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan i 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan i 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan I 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan I 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan j 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan j 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan J 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan J 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan k 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan k 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan K 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan K 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan l 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan l 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan L 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan L 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan m 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan m 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan M 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan M 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan n 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan n 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan N 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan N 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan o 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan o 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan O 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan O 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan p 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan p 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan P 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan P 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan q 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan q 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan Q 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan Q 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan r 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan r 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan R 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan R 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan s 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan s 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan S 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan S 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan t 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan t 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan T 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan T 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan u 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan u 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan U 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan U 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan v 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan v 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan V 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan V 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan w 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan w 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan W 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan W 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan x 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan x 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan X 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan X 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan y 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan y 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan Y 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan Y 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan z 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan z 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan Z 7 134 78  H-Bb H-Mn L-Bb 
Sulf_coat_C Domain Q8V9P2_7-134 3.5e-71 1 No_clan Z 7 134 78  H-Bb H-Mn L-Bb 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
3j9x.pdb1.pdb:   [ download sequences in FASTA format ]
7 (dna): 
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8 (dna): 
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1 (protein): 
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2 (protein): 
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3 (protein): 
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4 (protein): 
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5 (protein): 
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6 (protein): 
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a (protein): 
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B (protein): 
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C (protein): 
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d (protein): 
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e (protein): 
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f (protein): 
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G (protein): 
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h (protein): 
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I (protein): 
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j (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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n (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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s (protein): 
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T (protein): 
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U (protein): 
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v (protein): 
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w (protein): 
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x (protein): 
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y (protein): 
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z (protein): 
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