General information
PDB ID 3JB9
Title CRYO-EM STRUCTURE OF THE YEAST SPLICEOSOME AT 3.6 ANGSTROM RESOLUTION
PDB header RNA BINDING PROTEIN/RNA
Date 2015-08-09
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.6
Kind rna
Organism SCHIZOSACCHAROMYCES POMBE 972H-
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3jb9.pdb ABDEFGHIJKLMSTUVWYacdeghiRrXjkZbflmnox CNOQP 0
Biounits:
3jb9.pdb1.pdb ABDEFGHIJKLMSTUVWYacdeghiRrXjkZbflmnox CNOQP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PROCN Domain O14187_418-824 3.8e-233 1 No_clan A 418 824 CNOP   
PRP8_domainIV Domain O14187_1784-2013 2.5e-125 1 No_clan A 1784 2013   
U6-snRNA_bdg Domain O14187_1466-1624 1.6e-81 1 CL0363 A 1466 1624 N   
PRO8NT Domain O14187_79-229 1.1e-79 1 No_clan A 79 229 CN   
U5_2-snRNA_bdg Domain O14187_1234-1367 2.1e-71 1 No_clan A 1234 1367 C   
RRM_4 Domain O14187_1009-1100 4e-43 1 No_clan A 1009 1100 P   
RRM_1 Domain O59800_224-272 7.6e-05 1 CL0221 a 180 272 C   
GTP_EFTU Domain O94316_139-452 6.5e-44 1 CL0023 B 139 452 C   
EFG_IV Domain O94316_717-838 2e-28 1 CL0329 B 717 838   
LSM Domain Q10163_4-80 5.5e-22 1 CL0527 b 4 80 P   
EFG_C Domain O94316_840-929 1.2e-21 1 CL0437 B 840 929   
GTP_EFTU_D2 Domain O94316_503-580 4.6e-12 1 CL0575 B 503 580 C   
EFG_II Domain 3.7e-05 0 CL0437 B 597 670
Pro_isomerase Domain P87051_3-154 8.3e-53 1 CL0475 d 3 154 C   
LSM Domain Q9UUC6_6-71 7.9e-17 1 CL0527 D 6 71 C   
G10 Domain O74772_3-144 7.1e-62 1 No_clan e 3 144 CN   
LSM Domain Q10163_4-80 1.4e-21 1 CL0527 E 4 80 CN   
LSM Domain O42661_5-70 1.4e-19 1 CL0527 f 5 70 CP   
LSM Domain O42661_5-70 1.4e-19 1 CL0527 f 5 70 CP   
LSM Domain O42661_5-70 1.4e-19 1 CL0527 F 5 70 CP   
LSM Domain O42661_5-70 1.4e-19 1 CL0527 F 5 70 CP   
LSM Domain O14036_33-111 2e-18 1 CL0527 G 33 111 CN   
LSM Domain Q9USZ3_18-83 8.5e-18 1 CL0527 H 18 83 CN   
LSM Domain O59734_10-75 8.1e-22 1 CL0527 I 10 75 C   
LSM Domain O74966_7-72 6e-21 1 CL0527 J 7 72 C   
RRM_1 Domain Q7LL14_6-77 3.7e-09 1 CL0221 k 6 77 P   
LSM Domain O14036_33-111 3e-18 1 CL0527 l 33 111 CP   
LSM Domain Q9USZ3_18-83 8.5e-18 1 CL0527 m 18 83 P   
LSM Domain O59734_10-75 8.1e-22 1 CL0527 n 10 75 P   
LSM Domain O74966_7-72 6e-21 1 CL0527 o 7 72 P   
TPR_19 Domain 3.9e-05 0 CL0020 R 80 143 N
Prp19 Domain O14011_65-131 6.4e-30 1 No_clan S 65 132   
U-box Domain 8e-05 1 CL0229 S 1 55
Prp19 Domain O14011_65-131 6.6e-30 1 No_clan T 65 132   
U-box Domain 8.3e-05 1 CL0229 T 1 55
Prp19 Domain O14011_65-131 6.3e-29 1 No_clan U 65 132   
U-box Domain 0.00063 0 CL0229 U 1 55
Prp19 Domain O14011_65-131 1.3e-29 1 No_clan V 65 131   
U-box Domain 7.9e-05 1 CL0229 V 1 55
Myb_DNA-bind_6 Domain 1.6e-13 1 CL0123 W 9 69 NP
AAA_12 Domain O94508_1025-1218 7.6e-12 1 CL0023 X 1012 1218   
Torus Domain P87126_49-153 3.5e-40 1 CL0537 Y 49 153 N   
RRM_1 Domain P87126_176-241 1.7e-08 1 CL0221 Y 176 244 N   
LSM Domain Q9UUC6_6-71 4.4e-17 1 CL0527 Z 6 71 P   
EFTUD2 Family O94316_68-122 1.9e-21 1 No_clan B 68 122 CP   
CwfJ_C_1 Family Q09909_399-523 1e-41 1 CL0265 c 399 523 Q   
CwfJ_C_2 Family Q09909_532-633 2.9e-22 1 No_clan c 532 633   
Cwf_Cwc_15 Family 4.5e-18 1 No_clan h 67 265
Cwf_Cwc_15 Family 1.3e-11 1 No_clan h 24 223 CN
BCAS2 Family Q9USV3_7-185 1.8e-22 1 No_clan i 7 185 C   
SKIP_SNW Family Q09882_182-315 1.4e-52 1 No_clan M 182 315 NP   
HAT Family P87312_185-216 9.4e-20 1 CL0020 R 185 216   
Coatomer_WDAD Family 2.7e-05 0 CL0186 U 274 486
Aquarius_N Family 6.5e-23 1 No_clan X 7 483
LRR_9 Repeat 3.7e-54 1 CL0022 j 1 162 C
WD40 Repeat 8.5e-09 1 CL0186 K 153 191
WD40 Repeat O13615_153-191 4.4e-07 1 CL0186 K 279 317   
WD40 Repeat O13615_321-358 4.3e-06 1 CL0186 K 195 233   
WD40 Repeat O13615_321-358 0.00012 1 CL0186 K 237 275 CN   
WD40 Repeat O94620_84-121 3.3e-07 1 CL0186 L 209 247   
WD40 Repeat O94620_42-78 1.7e-05 1 CL0186 L 300 336   
WD40 Repeat O94620_42-78 0.00047 1 CL0186 L 43 78 CP   
WD40 Repeat O94620_125-164 0.00089 1 CL0186 L 125 164 C   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
3jb9.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
c (protein): 
Click "SHOW" for view sequence
d (protein): 
Click "SHOW" for view sequence
e (protein): 
Click "SHOW" for view sequence
f (protein): 
Click "SHOW" for view sequence
g (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
j (protein): 
Click "SHOW" for view sequence
k (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
n (protein): 
Click "SHOW" for view sequence
o (protein): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
T (protein): 
Click "SHOW" for view sequence
U (protein): 
Click "SHOW" for view sequence
V (protein): 
Click "SHOW" for view sequence
W (protein): 
Click "SHOW" for view sequence
x (protein): 
Click "SHOW" for view sequence
Y (protein): 
Click "SHOW" for view sequence
Z (protein): 
Click "SHOW" for view sequence
P (rna): 
Click "SHOW" for view sequence
Q (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text