General information
PDB ID 3JCA
Title CORE MODEL OF THE MOUSE MAMMARY TUMOR VIRUS INTASOME
PDB header VIRAL PROTEIN
Date 2015-11-24
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.8
Kind dna
Organism MOUSE MAMMARY TUMOR VIRUS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3jca.pdb ABCDEFGH IJKL 0
Biounits:
3jca.pdb1.pdb ABCDEFGH IJKL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
rve Domain P03365_1492-1604 3.2e-29 1 CL0219 A 56 168 IJ  H-Bb H-Mn L-Bb 
IN_DBD_C Domain P03365_1653-1700 9.6e-25 1 No_clan A 215 264 JKI  H-Bb S-Bb L-Mj 
Integrase_Zn Domain P03365_1441-1477 3.3e-18 1 No_clan A 5 45 KL  H-Bb H-Mj 
rve Domain P03365_1492-1604 3e-29 1 CL0219 B 56 168   
IN_DBD_C Domain P03365_1653-1700 9.1e-25 1 No_clan B 215 264   
Integrase_Zn Domain P03365_1441-1477 9.8e-19 1 No_clan B 5 54   
IN_DBD_C Domain P03365_1653-1700 8.4e-26 1 No_clan C 217 264 KL  H-Bb S-Bb 
IN_DBD_C Domain P03365_1653-1700 8.4e-26 1 No_clan D 217 264 I  H-Bb 
rve Domain P03365_1492-1604 3.2e-29 1 CL0219 E 56 168 KL  H-Bb H-Mj H-Mn L-Bb 
IN_DBD_C Domain P03365_1653-1700 9.6e-25 1 No_clan E 215 264 ILK  H-Bb S-Bb L-Mj 
Integrase_Zn Domain P03365_1441-1477 3.3e-18 1 No_clan E 5 45 IJ  H-Bb H-Mj 
rve Domain P03365_1492-1604 3e-29 1 CL0219 F 56 168   
IN_DBD_C Domain P03365_1653-1700 9.1e-25 1 No_clan F 215 264   
Integrase_Zn Domain P03365_1441-1477 9.8e-19 1 No_clan F 5 54   
IN_DBD_C Domain P03365_1653-1700 8.4e-26 1 No_clan G 217 264 IJ  H-Bb S-Bb 
IN_DBD_C Domain P03365_1653-1700 8.4e-26 1 No_clan H 217 264 K   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
3jca.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
Click "SHOW" for view sequence
J (dna): 
Click "SHOW" for view sequence
K (dna): 
Click "SHOW" for view sequence
L (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text