General information
PDB ID 3JCM
Title CRYO-EM STRUCTURE OF THE SPLICEOSOMAL U4/U6.U5 TRI-SNRNP
PDB header TRANSCRIPTION
Date 2015-12-23
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.8
Kind rna
Organism SACCHAROMYCES CEREVISIAE S288C, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3jcm.pdb ABIGKLMHNRSTUVWXJOPQYZabcdefgh CDEF 0
Biounits:
3jcm.pdb1.pdb ABIGKLMHNRSTUVWXJOPQYZabcdefgh CDEF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PROCN Domain P33334_470-874 8.8e-209 1 No_clan A 470 874 CDF   
PRP8_domainIV Domain P33334_1832-2061 1.6e-121 1 No_clan A 1832 2061   
U6-snRNA_bdg Domain P33334_1514-1672 2.9e-85 1 CL0363 A 1514 1672 CDE   
PRO8NT Domain P33334_131-282 2.7e-79 1 No_clan A 131 282 F   
U5_2-snRNA_bdg Domain P33334_1282-1415 3.7e-69 1 No_clan A 1282 1415 CF   
RRM_4 Domain P33334_1059-1150 2.9e-47 1 No_clan A 1059 1150   
PROCT Domain P33334_2289-2395 1.5e-42 1 No_clan A 2289 2395   
LSM Domain P40204_5-73 3.3e-16 1 CL0527 a 5 73   
LSM Domain P47093_3-66 0.000000000017 1 CL0527 b 3 66 DE   
LSM Domain P38203_5-72 1.1e-18 1 CL0527 c 5 72 D   
LSM Domain 1.2e-21 1 CL0527 d 6 78
LSM Domain Q06406_14-83 4.9e-18 1 CL0527 e 14 83   
LSM Domain P40089_10-83 1.3e-19 1 CL0527 f 10 83   
LSM Domain P53905_28-104 9.7e-20 1 CL0527 g 28 104   
PRP1_N Domain 0.00000000083 1 No_clan G 74 131
PRP1_N Domain 0.00042 0 No_clan G 11 85
GTP_EFTU Domain P36048_131-442 2.7e-36 1 CL0023 H 131 443 F   
LSM Domain P40070_5-81 6.8e-20 1 CL0527 h 5 81   
GTP_EFTU_D2 Domain P36048_481-578 3.1e-16 1 CL0575 H 481 578   
EFG_C Domain P36048_856-948 0.000000000000012 1 CL0437 H 856 948   
EFG_IV Domain P36048_738-854 0.0000000000006 1 CL0329 H 738 854   
LSM Domain P43321_9-74 1.8e-16 1 CL0527 J 9 74   
PRP3 Domain Q03338_140-318 5.4e-32 1 No_clan K 174 318 DE   
DUF1115 Domain Q03338_340-466 3e-31 1 CL0622 K 340 466 D   
DIM1 Domain Q06819_5-137 3.5e-67 1 CL0172 L 5 137 C   
Ribosomal_L7Ae Domain P39990_18-112 1.1e-27 1 CL0101 M 18 112 DE   
DEAD Domain P32639_500-680 3.2e-28 1 CL0023 N 500 680   
DEAD Domain P32639_1349-1520 0.0000000000000048 1 CL0023 N 1349 1520   
LSM Domain P40018_10-97 2e-22 1 CL0527 O 10 97 E   
LSM Domain Q02260_5-97 5.7e-19 1 CL0527 P 5 102 E   
LSM Domain Q06217_37-106 8.1e-18 1 CL0527 Q 37 106 E   
LSM Domain P43321_9-74 1.8e-16 1 CL0527 R 9 74   
LSM Domain P40018_10-97 2e-22 1 CL0527 S 10 97 F   
LSM Domain Q02260_5-97 5.7e-19 1 CL0527 T 5 102   
LSM Domain Q06217_37-106 8.3e-18 1 CL0527 U 37 106 F   
LSM Domain Q12330_19-92 0.00000000000022 1 CL0527 V 19 92   
LSM Domain P54999_17-83 9.6e-18 1 CL0527 W 17 83   
LSM Domain P40204_5-73 7.2e-16 1 CL0527 X 5 73   
LSM Domain Q12330_19-92 0.00000000000022 1 CL0527 Y 19 92   
LSM Domain P54999_17-83 9.6e-18 1 CL0527 Z 17 83   
Nop Family P49704_101-343 3.8e-63 1 No_clan I 101 343 E   
Prp31_C Family P49704_350-462 1e-26 1 No_clan I 350 460 DE   
Sec63 Family P32639_998-1307 1.8e-74 1 No_clan N 998 1307   
Sec63 Family P32639_1847-2159 4.6e-62 1 No_clan N 1825 2159   
Helicase_C Family P32639_721-879 0.000000084 1 CL0023 N 721 879   
WD40 Repeat P20053_339-377 0.00000011 1 CL0186 B 339 377   
WD40 Repeat P20053_427-465 0.0000012 1 CL0186 B 427 465   
WD40 Repeat P20053_255-293 0.00055 1 CL0186 B 255 293   
WD40 Repeat P20053_298-335 0.001 1 CL0186 B 298 335   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
3jcm.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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b (protein): 
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e (protein): 
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G (protein): 
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h (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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C (rna): 
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D (rna): 
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F (rna): 
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