General information
PDB ID 3JCR
Title 3D STRUCTURE DETERMINATION OF THE HUMAN*U4/U6.U5* TRI-SNRNP COMPLEX
PDB header SPLICING
Date 2016-01-21
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7
Kind rna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3jcr.pdb GDCEAFBOPQRSTU8654327KLJIopqrstuV MNH 0
Biounits:
3jcr.pdb1.pdb GDCEAFBOPQRSTU8654327KLJIopqrstuV MNH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
LSM Domain Q9Y333_5-72 3.7e-17 1 CL0527 2 5 72   
LSM Domain P62310_19-97 1.8e-20 1 CL0527 3 19 97   
LSM Domain Q9Y4Z0_5-71 1.3e-17 1 CL0527 4 5 71   
LSM Domain Q9Y4Y9_16-84 8.6e-21 1 CL0527 5 16 84   
LSM Domain P62312_10-75 5.4e-20 1 CL0527 6 10 75   
LSM Domain Q9UK45_13-86 1.1e-21 1 CL0527 7 13 86   
LSM Domain O95777_4-72 9.1e-20 1 CL0527 8 4 72   
PROCN Domain Q6P2Q9_395-801 9.1e-236 1 No_clan A 395 801   
PRP8_domainIV Domain Q6P2Q9_1760-1989 3.5e-130 1 No_clan A 1760 1989   
U6-snRNA_bdg Domain Q6P2Q9_1442-1600 4.5e-92 1 CL0363 A 1442 1600   
PRO8NT Domain Q6P2Q9_61-209 5.2e-86 1 No_clan A 52 209   
U5_2-snRNA_bdg Domain Q6P2Q9_1210-1343 4.5e-74 1 No_clan A 1210 1343   
PROCT Domain Q6P2Q9_2212-2314 4e-49 1 No_clan A 2212 2314   
RRM_4 Domain Q6P2Q9_986-1077 4.7e-48 1 No_clan A 986 1077   
GTP_EFTU Domain Q15029_127-440 2e-45 1 CL0023 B 127 440   
EFG_IV Domain Q15029_703-824 1.1e-23 1 CL0329 B 703 824   
EFG_C Domain Q15029_826-915 1.7e-22 1 CL0437 B 826 915   
GTP_EFTU_D2 Domain Q15029_489-566 0.0000000000012 1 CL0575 B 489 566   
EFG_II Domain Q15029_584-656 0.000000057 1 CL0437 B 584 656   
DEAD Domain O75643_1329-1514 8.7e-25 1 CL0023 C 1329 1514   
DEAD Domain O75643_482-663 1.7e-24 1 CL0023 C 482 663   
DIM1 Domain P83876_4-136 7.7e-70 1 CL0172 E 4 136   
DEAD Domain Q9BUQ8_415-616 1.1e-51 1 CL0023 F 415 616   
Ribosomal_L7Ae Domain P55769_20-114 2.3e-25 1 CL0101 I 20 114   
DUF1115 Domain O43395_544-673 7.2e-49 1 CL0622 K 544 673   
LSM Domain P14678_7-82 3.9e-21 1 CL0527 o 7 82   
LSM Domain P14678_7-82 3.9e-21 1 CL0527 o 7 82   
LSM Domain P14678_7-82 3.9e-21 1 CL0527 O 7 82   
LSM Domain P14678_7-82 3.9e-21 1 CL0527 O 7 82   
LSM Domain P62314_5-70 2.8e-19 1 CL0527 p 5 70   
LSM Domain P62314_5-70 0.0000000000000018 1 CL0527 P 5 70   
LSM Domain P62316_33-111 2.5e-19 1 CL0527 q 33 111   
LSM Domain P62316_33-111 2.5e-19 1 CL0527 q 33 111   
LSM Domain P62316_33-111 2.5e-19 1 CL0527 Q 33 111   
LSM Domain P62316_33-111 2.5e-19 1 CL0527 Q 33 111   
LSM Domain P62318_8-73 3.1e-16 1 CL0527 r 8 73   
LSM Domain P62318_8-73 3.1e-16 1 CL0527 r 8 73   
LSM Domain P62318_8-73 3.1e-16 1 CL0527 R 8 73   
LSM Domain P62318_8-73 3.1e-16 1 CL0527 R 8 73   
LSM Domain P62304_23-89 5.1e-18 1 CL0527 s 23 89   
LSM Domain P62304_23-89 5.1e-18 1 CL0527 s 23 89   
LSM Domain P62304_23-89 5.1e-18 1 CL0527 S 23 89   
LSM Domain P62304_23-89 5.1e-18 1 CL0527 S 23 89   
LSM Domain P62306_9-74 1e-21 1 CL0527 T 9 74   
LSM Domain P62306_9-74 1e-21 1 CL0527 T 9 74   
LSM Domain P62306_9-74 1.6e-21 1 CL0527 t 9 74   
LSM Domain P62306_9-74 1.6e-21 1 CL0527 t 9 74   
LSM Domain P62308_7-72 6e-23 1 CL0527 u 7 72   
LSM Domain P62308_7-72 6e-23 1 CL0527 u 7 72   
LSM Domain P62308_7-72 6e-23 1 CL0527 U 7 72   
LSM Domain P62308_7-72 6e-23 1 CL0527 U 7 72   
zf-UBP Domain Q53GS9_123-186 0.000000000033 1 CL0229 V 124 186   
JAB Family Q6P2Q9_2099-2205 0.00000000000038 1 CL0366 A 2099 2205   
Sec63 Family O75643_981-1285 9.2e-95 1 No_clan C 981 1285   
Sec63 Family O75643_1812-2123 1.1e-81 1 No_clan C 1812 2123   
Helicase_C Family O75643_703-860 0.00000089 1 CL0023 C 703 860   
Helicase_C Family Q9BUQ8_650-759 9.3e-17 1 CL0023 F 650 759   
Nop Family Q8WWY3_99-330 1.6e-80 1 No_clan J 99 330   
UCH Family Q53GS9_225-552 2e-41 1 CL0125 V 225 552   
WD40 Repeat Q96DI7_186-221 0.00000069 1 CL0186 D 56 94   
WD40 Repeat Q96DI7_56-94 0.00000079 1 CL0186 D 224 263   
WD40 Repeat Q96DI7_56-94 0.0000036 1 CL0186 D 141 180   
WD40 Repeat Q96DI7_271-313 0.000018 1 CL0186 D 271 313   
WD40 Repeat Q96DI7_186-221 0.00015 1 CL0186 D 99 137   
WD40 Repeat Q96DI7_186-221 0.00066 1 CL0186 D 317 353   
WD40 Repeat O43172_313-351 0.0000000073 1 CL0186 L 397 435   
WD40 Repeat O43172_313-351 0.00000028 1 CL0186 L 482 520   
WD40 Repeat O43172_263-309 0.000011 1 CL0186 L 263 309   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
3jcr.pdb1.pdb:   [ download sequences in FASTA format ]
2 (protein): 
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3 (protein): 
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4 (protein): 
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5 (protein): 
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6 (protein): 
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7 (protein): 
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8 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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o (protein): 
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p (protein): 
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Q (protein): 
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r (protein): 
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s (protein): 
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T (protein): 
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u (protein): 
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V (protein): 
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H (rna): 
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M (rna): 
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N (rna): 
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