General information
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| PDB ID | 3K5M |
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| Title | CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DDGTP LT(-2, 2) TERNARY COMPLEX | ||||
| PDB header | TRANSFERASE/DNA | ||||
| Date | 2009-10-07 | ||||
| Experimental method | X-RAY DIFFRACTION | ||||
| Resolution (A) | 2.04 | ||||
| Kind | dna | ||||
| Organism | ESCHERICHIA COLI | ||||
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Quick Links
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Composition of PDB entry and biounits
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| File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
| PDB entry: | |||||
| pdb3k5m.pdb | A | TP | 0 |
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| Biounits: | |||||
| 3k5m.pdb1.pdb | A | TP | 1 |
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Pfam domains
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| Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
DNA_pol_B
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Family | P21189_365-765 | 4e-42 | 1 |
CL0194
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A | 366 | 762 | PT | H-Bb S-Bb L-Bb L-Mn |
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DNA_pol_B_exo1
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Family | P21189_185-296 | 0.00000043 | 1 |
CL0219
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A | 185 | 296 | T |
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DNA_pol_B_exo1
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Family | P21189_63-168 | 0.000051 | 1 |
CL0219
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A | 63 | 168 |
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SCOP domains
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| No SCOP domains | |||||||
| GO terms | ||
| Protein chains: | GO type: | GO description: |
| A=1-783 | C | chromosome |
| A=1-783 | F | 3'-5'-exodeoxyribonuclease activity |
| A=1-783 | F | nucleotide binding |
| A=1-783 | F | DNA binding |
| A=1-783 | F | DNA-directed DNA polymerase activity |
| A=1-783 | P | DNA replication proofreading |
| A=1-783 | P | SOS response |
| A=1-783 | P | nucleotide-excision repair, DNA gap filling |
| A=1-783 | P | translesion synthesis |
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Sequences
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Download file with secondary structure created by Stride
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3k5m.pdb1.pdb:
[
download sequences in FASTA format
]
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P (dna):
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T (dna):
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A (protein):
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