General information
PDB ID 3KD5
Title CLOSED TERNARY COMPLEX OF AN RB69 GP43 FINGERS DOMAIN MUTANT COMPLEXED WITH AN ACYCLIC GMP TERMINATED PRIMER TEMPLATE PAIR AND PHOSPHONOFORMIC ACID.
PDB header TRANSFERASE/DNA
Date 2009-10-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.69
Kind dna
Organism ENTEROBACTERIA PHAGE RB69
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3kd5.pdb E TP 0
Biounits:
3kd5.pdb1.pdb E TP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B Family Q38087_363-784 7.4e-34 1 CL0194 E 350 791 PT  S-Bb L-Bb L-Mn 
DNA_pol_B_exo1 Family Q38087_19-293 2.1e-26 1 CL0219 E 19 293 PT  L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
E=1-903 F nucleotide binding
E=1-903 F DNA binding
E=1-903 F exonuclease activity
E=1-903 F DNA-directed DNA polymerase activity
E=1-903 P nucleic acid phosphodiester bond hydrolysis
E=1-903 P DNA replication
Sequences
Download file with secondary structure created by Stride  
3kd5.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
Click "SHOW" for view sequence
T (dna): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text