General information
PDB ID 3KFU
Title CRYSTAL STRUCTURE OF THE TRANSAMIDOSOME
PDB header LIGASE/RNA
Date 2009-10-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind rna
Organism THERMUS THERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA WebPDA
EDS PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3kfu.pdb ABCDEFGHIJ KLMN 0
Biounits:
3kfu.pdb1.pdb ABCDEFGHIJ KLMN 1
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
tRNA-synt_2 Domain 9.8e-49 1 CL0040 A 179 414
tRNA_anti-codon Domain 0.000002 1 CL0021 A 15 85 L
tRNA-synt_2 Domain 0.0000047 1 CL0040 A 104 150 L
tRNA-synt_2 Domain 8e-51 1 CL0040 B 149 415
tRNA_anti-codon Domain 0.000002 1 CL0021 B 15 85 N
tRNA-synt_2 Domain 1.3e-50 1 CL0040 C 179 415
tRNA_anti-codon Domain 0.000002 1 CL0021 C 15 85 K
tRNA-synt_2 Domain 0.0000048 1 CL0040 C 104 150 K
tRNA-synt_2 Domain 5.9e-47 1 CL0040 D 148 416
tRNA_anti-codon Domain 0.000002 1 CL0021 D 15 85 M
GatB_N Domain 7.6e-101 1 CL0286 F 4 281 LM
GatB_Yqey Domain 0.000000000029 1 CL0279 F 319 603 L
GatB_N Domain 1.2e-100 1 CL0286 I 4 281 KN
GatB_Yqey Domain 0.000000000071 1 CL0279 I 319 604 K
Amidase Family 1.5e-143 1 No_clan E 19 448 M
Glu-tRNAGln Family 0.000000000000021 1 No_clan G 20 85
Amidase Family 1.4e-143 1 No_clan H 19 448 N
Glu-tRNAGln Family 0.00000000000019 1 No_clan J 20 85
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
F/I=1-396 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
F/I=1-396 F ATP binding
F/I=1-396 P translation
G/J=1-89 F ligase activity
G/J=1-89 P regulation of translational fidelity
Sequences
Download file with secondary structure created by Stride  
3kfu.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (rna): 
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L (rna): 
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M (rna): 
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N (rna): 
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