General information
PDB ID 3KK1
Title HIV-1 REVERSE TRANSCRIPTASE-DNA COMPLEX WITH NUCEOTIDE INHIBITOR GS- 9148-DIPHOSPHATE BOUND IN NUCLEOTIDE SITE
PDB header TRANSFERASE/DNA
Date 2009-11-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3kk1.pdb AB PT 0
Biounits:
3kk1.pdb1.pdb AB PT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RVT_connect Domain P04585_905-1006 2.2e-59 1 No_clan A 318 419 PT  S-Bb L-Bb 
RNase_H Domain P04585_1023-1143 3e-28 1 CL0219 A 436 555 PT  H-Bb L-Bb 
RVT_thumb Domain P04585_828-891 3.6e-18 1 No_clan A 241 304 P  H-Bb 
RVT_connect Domain P04585_905-1006 1.3e-59 1 No_clan B 318 419 P   
RVT_thumb Domain P04585_828-891 3.8e-20 1 No_clan B 241 304   
RVT_1 Family P04585_650-821 9e-35 1 CL0027 A 63 234 PT  S-Bb S-Mn L-Bb 
RVT_1 Family P04585_650-821 2.4e-33 1 CL0027 B 63 267   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=588-1147, B=588-1027 C viral capsid
A=588-1147, B=588-1027 C host cell plasma membrane
A=588-1147, B=588-1027 C cytosol
A=588-1147, B=588-1027 C host cell nucleus
A=588-1147, B=588-1027 C membrane
A=588-1147, B=588-1027 C nucleoplasm
A=588-1147, B=588-1027 C host cell cytoplasm
A=588-1147, B=588-1027 F structural molecule activity
A=588-1147, B=588-1027 F DNA binding
A=588-1147, B=588-1027 F RNA binding
A=588-1147, B=588-1027 F RNA-directed DNA polymerase activity
A=588-1147, B=588-1027 F zinc ion binding
A=588-1147, B=588-1027 F DNA-directed DNA polymerase activity
A=588-1147, B=588-1027 F aspartic-type endopeptidase activity
A=588-1147, B=588-1027 F exoribonuclease H activity
A=588-1147, B=588-1027 F ribonuclease H activity
A=588-1147, B=588-1027 P entry into host cell
A=588-1147, B=588-1027 P nucleic acid phosphodiester bond hydrolysis
A=588-1147, B=588-1027 P RNA-dependent DNA replication
A=588-1147, B=588-1027 P proteolysis
A=588-1147, B=588-1027 P uncoating of virus
A=588-1147, B=588-1027 P viral procapsid maturation
A=588-1147, B=588-1027 P modulation by virus of host apoptosis
A=588-1147, B=588-1027 P provirus integration
Sequences
Download file with secondary structure created by Stride  
3kk1.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
Click "SHOW" for view sequence
T (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text