General information
PDB ID 3KOV
Title STRUCTURE OF MEF2A BOUND TO DNA REVEALS A COMPLETELY FOLDED MADS- BOX/MEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS TRANSCRIPTION CO- FACTORS
PDB header TRANSCRIPTION/DNA
Date 2009-11-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.9
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3kov.pdb ABIJ CDKL 0
Biounits:
3kov.pdb1.pdb AB CD 1
3kov.pdb2.pdb IJ KL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SRF-TF Domain Q02078_10-57 3.7e-25 1 No_clan A 10 57   
SRF-TF Domain Q02078_10-57 3.7e-25 1 No_clan B 10 57 D   
SRF-TF Domain Q02078_10-57 3.7e-25 1 No_clan I 10 57   
SRF-TF Domain Q02078_10-57 3.7e-25 1 No_clan J 10 57 L   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/I/J=2-91 C nucleoplasm
A/B/I/J=2-91 C nuclear chromatin
A/B/I/J=2-91 F RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
A/B/I/J=2-91 F chromatin binding
A/B/I/J=2-91 F RNA polymerase II regulatory region sequence-specific DNA binding
A/B/I/J=2-91 F RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
A/B/I/J=2-91 F RNA polymerase II transcription coactivator activity
A/B/I/J=2-91 F sequence-specific DNA binding RNA polymerase II transcription factor activity
A/B/I/J=2-91 P innate immune response
A/B/I/J=2-91 P negative regulation of transcription from RNA polymerase II promoter
A/B/I/J=2-91 P positive regulation of muscle cell differentiation
A/B/I/J=2-91 P dendrite morphogenesis
A/B/I/J=2-91 P nerve growth factor receptor signaling pathway
A/B/I/J=2-91 P mitochondrial genome maintenance
A/B/I/J=2-91 P toll-like receptor 2 signaling pathway
A/B/I/J=2-91 P MyD88-dependent toll-like receptor signaling pathway
A/B/I/J=2-91 P Toll signaling pathway
A/B/I/J=2-91 P apoptotic process
A/B/I/J=2-91 P cardiac conduction
A/B/I/J=2-91 P toll-like receptor 3 signaling pathway
A/B/I/J=2-91 P ERK5 cascade
A/B/I/J=2-91 P toll-like receptor 1 signaling pathway
A/B/I/J=2-91 P ventricular cardiac myofibril development
A/B/I/J=2-91 P stress-activated MAPK cascade
A/B/I/J=2-91 P muscle organ development
A/B/I/J=2-91 P toll-like receptor 4 signaling pathway
A/B/I/J=2-91 P TRIF-dependent toll-like receptor signaling pathway
A/B/I/J=2-91 P mitochondrion distribution
A/B/I/J=2-91 P cellular response to calcium ion
Sequences
Download file with secondary structure created by Stride  
3kov.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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3kov.pdb2.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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I (protein): 
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J (protein): 
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