General information
PDB ID 3L1P
Title POU PROTEIN:DNA COMPLEX
PDB header TRANSCRIPTION/DNA
Date 2009-12-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3l1p.pdb AB NM 0
Biounits:
3l1p.pdb1.pdb AB NM 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Pou Domain P20263_134-205 2.6e-34 1 CL0123 A 4 75 MN  H-Bb H-Mj L-Bb L-Mj 
Homeodomain Domain P20263_224-280 6.7e-18 1 CL0123 A 94 150 MN  H-Bb H-Mj L-Bb L-Mn 
Pou Domain P20263_134-205 2.5e-34 1 CL0123 B 4 75 MN  H-Bb H-Mj L-Bb L-Mj 
Homeodomain Domain P20263_224-280 6.5e-18 1 CL0123 B 94 150 MN  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=131-282 C cytoplasm
A/B=131-282 C cytosol
A/B=131-282 C mitochondrion
A/B=131-282 C nuclear chromatin
A/B=131-282 C nucleolus
A/B=131-282 C nucleoplasm
A/B=131-282 C nucleus
A/B=131-282 C transcription regulator complex
A/B=131-282 C transcription repressor complex
A/B=131-282 F chromatin binding
A/B=131-282 F chromatin DNA binding
A/B=131-282 F cis-regulatory region sequence-specific DNA binding
A/B=131-282 F cytokine binding
A/B=131-282 F DNA binding
A/B=131-282 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/B=131-282 F DNA-binding transcription factor activity
A/B=131-282 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B=131-282 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A/B=131-282 F HMG box domain binding
A/B=131-282 F miRNA binding
A/B=131-282 F POU domain binding
A/B=131-282 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=131-282 F RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
A/B=131-282 F sequence-specific DNA binding
A/B=131-282 F sequence-specific double-stranded DNA binding
A/B=131-282 F transcription coactivator activity
A/B=131-282 F transcription corepressor activity
A/B=131-282 F transcription factor binding
A/B=131-282 F transcription regulatory region sequence-specific DNA binding
A/B=131-282 F ubiquitin protein ligase binding
A/B=131-282 P blastocyst development
A/B=131-282 P blastocyst growth
A/B=131-282 P BMP signaling pathway involved in heart induction
A/B=131-282 P cardiac cell fate determination
A/B=131-282 P cell differentiation
A/B=131-282 P cell fate commitment
A/B=131-282 P cell fate commitment involved in formation of primary germ layer
A/B=131-282 P cellular response to leukemia inhibitory factor
A/B=131-282 P ectodermal cell fate commitment
A/B=131-282 P endodermal cell fate commitment
A/B=131-282 P endodermal cell fate specification
A/B=131-282 P germ-line stem cell population maintenance
A/B=131-282 P mesodermal cell fate commitment
A/B=131-282 P negative regulation of calcium ion-dependent exocytosis
A/B=131-282 P negative regulation of cell differentiation
A/B=131-282 P negative regulation of gene expression
A/B=131-282 P negative regulation of gene silencing by miRNA
A/B=131-282 P negative regulation of pri-miRNA transcription by RNA polymerase II
A/B=131-282 P negative regulation of protein kinase B signaling
A/B=131-282 P negative regulation of transcription by RNA polymerase II
A/B=131-282 P negative regulation of transcription, DNA-templated
A/B=131-282 P positive regulation of canonical Wnt signaling pathway
A/B=131-282 P positive regulation of gene expression
A/B=131-282 P positive regulation of SMAD protein signal transduction
A/B=131-282 P positive regulation of transcription by RNA polymerase II
A/B=131-282 P positive regulation of transcription initiation from RNA polymerase II promoter
A/B=131-282 P positive regulation of transcription, DNA-templated
A/B=131-282 P regulation of asymmetric cell division
A/B=131-282 P regulation of DNA methylation-dependent heterochromatin assembly
A/B=131-282 P regulation of gene expression
A/B=131-282 P regulation of heart induction by regulation of canonical Wnt signaling pathway
A/B=131-282 P regulation of transcription by RNA polymerase II
A/B=131-282 P regulation of transcription, DNA-templated
A/B=131-282 P response to organic substance
A/B=131-282 P response to retinoic acid
A/B=131-282 P somatic stem cell population maintenance
A/B=131-282 P stem cell differentiation
A/B=131-282 P stem cell population maintenance
A/B=131-282 P transcription by RNA polymerase II
A/B=131-282 P trophectodermal cell differentiation
Sequences
Download file with secondary structure created by Stride  
3l1p.pdb1.pdb:   [ download sequences in FASTA format ]
M (dna): 
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N (dna): 
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A (protein): 
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B (protein): 
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