General information
PDB ID 3L2Q
Title CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN APO FORM
PDB header RECOMBINATION/DNA
Date 2009-12-15
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.25
Kind dna
Organism HUMAN SPUMARETROVIRUS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3l2q.pdb AB CD 0
Biounits:
3l2q.pdb1.pdb AB CD 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SH3_11 Domain P14350_1064-1125 3.2e-44 1 CL0010 A 313 374 C  L-Bb 
Integrase_H2C2 Domain P14350_800-856 3.3e-15 1 CL0361 A 49 105 CD  H-Mj 
rve Domain P14350_869-965 4.4e-13 1 CL0219 A 118 214 CD   
rve Domain P14350_869-965 7.2e-14 1 CL0219 B 118 214   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=752-1143 C host cell cytoplasm
A/B=752-1143 C host cell nucleus
A/B=752-1143 C virion
A/B=752-1143 F aspartic-type endopeptidase activity
A/B=752-1143 F DNA-directed DNA polymerase activity
A/B=752-1143 F identical protein binding
A/B=752-1143 F metal ion binding
A/B=752-1143 F RNA binding
A/B=752-1143 F RNA-directed DNA polymerase activity
A/B=752-1143 F RNA-DNA hybrid ribonuclease activity
A/B=752-1143 P DNA integration
A/B=752-1143 P DNA recombination
A/B=752-1143 P establishment of integrated proviral latency
A/B=752-1143 P viral entry into host cell
A/B=752-1143 P viral genome integration into host DNA
A/B=752-1143 P viral penetration into host nucleus
Sequences
Download file with secondary structure created by Stride  
3l2q.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text