General information
PDB ID 3M9E
Title THYROID HORMONE BETA DNA BINDING DOMAIN HOMODIMER WITH INVERTED PALINDROME TRE
PDB header TRANSCRIPTION/DNA
Date 2010-03-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.41
Kind dna
Organism RATTUS NORVEGICUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3m9e.pdb ABEF CDGH 0
Biounits:
3m9e.pdb1.pdb AB CD 1
3m9e.pdb2.pdb EF GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-C4 Domain P18113_105-176 3.5e-31 1 CL0167 A 104 175 CD  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-C4 Domain P18113_105-176 3.3e-31 1 CL0167 B 104 175 CD  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-C4 Domain P18113_105-176 3.6e-31 1 CL0167 E 104 175 GH  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-C4 Domain P18113_105-176 3e-31 1 CL0167 F 104 175 GH  H-Bb H-Mj S-Bb S-Mj L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/E/F=104-206 C host cell nucleus
A/B/E/F=104-206 C nucleus
A/B/E/F=104-206 C RNA polymerase II transcription regulator complex
A/B/E/F=104-206 F chromatin DNA binding
A/B/E/F=104-206 F double-stranded DNA binding
A/B/E/F=104-206 F enzyme binding
A/B/E/F=104-206 F identical protein binding
A/B/E/F=104-206 F nuclear receptor activity
A/B/E/F=104-206 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A/B/E/F=104-206 F signaling receptor activity
A/B/E/F=104-206 F thyroid hormone binding
A/B/E/F=104-206 F transcription factor binding
A/B/E/F=104-206 F zinc ion binding
A/B/E/F=104-206 P animal organ morphogenesis
A/B/E/F=104-206 P cell differentiation
A/B/E/F=104-206 P embryonic organ development
A/B/E/F=104-206 P female courtship behavior
A/B/E/F=104-206 P hormone-mediated signaling pathway
A/B/E/F=104-206 P negative regulation of eye photoreceptor cell development
A/B/E/F=104-206 P negative regulation of female receptivity
A/B/E/F=104-206 P negative regulation of transcription by RNA polymerase II
A/B/E/F=104-206 P negative regulation of transcription, DNA-templated
A/B/E/F=104-206 P positive regulation of cell population proliferation
A/B/E/F=104-206 P positive regulation of chondrocyte differentiation
A/B/E/F=104-206 P positive regulation of ossification
A/B/E/F=104-206 P positive regulation of transcription by RNA polymerase II
A/B/E/F=104-206 P regulation of cholesterol metabolic process
A/B/E/F=104-206 P regulation of heart contraction
A/B/E/F=104-206 P regulation of lipid metabolic process
A/B/E/F=104-206 P regulation of transcription by RNA polymerase II
A/B/E/F=104-206 P regulation of triglyceride metabolic process
A/B/E/F=104-206 P retinal cone cell apoptotic process
A/B/E/F=104-206 P retinal cone cell development
A/B/E/F=104-206 P sensory perception of sound
A/B/E/F=104-206 P thyroid hormone mediated signaling pathway
A/B/E/F=104-206 P type I pneumocyte differentiation
Sequences
Download file with secondary structure created by Stride  
3m9e.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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3m9e.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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E (protein): 
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F (protein): 
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