General information
PDB ID 3MVD
Title CRYSTAL STRUCTURE OF THE CHROMATIN FACTOR RCC1 IN COMPLEX WITH THE NUCLEOSOME CORE PARTICLE
PDB header SIGNALING PROTEIN/STRUCTURAL PROTEIN/DNA
Date 2010-05-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.9
Kind dna
Organism XENOPUS LAEVIS, DROSOPHILA MELANOGASTER
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3mvd.pdb ABCDEFGHKL IJ 0
Biounits:
3mvd.pdb1.pdb ABCDEFGHKL IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_39-132 3.4e-46 1 CL0012 A 37 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 0.0000000091 1 CL0012 B 24 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q6AZJ8_15-91 5.2e-16 1 CL0012 C 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 9.6e-22 1 CL0012 D 29 98 IJ  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P84233_39-132 7.1e-45 1 CL0012 E 40 131 IJ  H-Bb H-Mj S-Bb L-Bb 
CENP-T_C Domain P62799_18-99 0.00000001 1 CL0012 F 23 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q6AZJ8_15-91 5.2e-16 1 CL0012 G 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 9.6e-22 1 CL0012 H 29 98 IJ  H-Bb S-Bb L-Bb 
Histone_H2A_C Family Q6AZJ8_92-120 2.1e-17 1 No_clan C 91 118   
Histone_H2A_C Family Q6AZJ8_92-120 2.1e-17 1 No_clan G 91 118   
RCC1 Repeat P25171_92-141 0.0000000011 1 CL0186 K 92 141   
RCC1 Repeat P25171_363-414 0.0000004 1 CL0186 K 363 414   
RCC1 Repeat P25171_42-89 0.00000087 1 CL0186 K 42 89   
RCC1 Repeat P25171_42-89 0.000032 1 CL0186 K 144 193   
RCC1 Repeat P25171_363-414 0.0004 0 CL0186 K 196 255 IJ  L-Bb 
RCC1 Repeat P25171_42-89 0.00082 0 CL0186 K 316 360   
RCC1 Repeat P25171_92-141 0.0000000011 1 CL0186 L 92 141   
RCC1 Repeat P25171_363-414 0.00000041 1 CL0186 L 363 414   
RCC1 Repeat P25171_42-89 0.00000088 1 CL0186 L 42 89   
RCC1 Repeat P25171_42-89 0.000032 1 CL0186 L 144 193   
RCC1 Repeat P25171_363-414 0.0004 0 CL0186 L 196 255 J  L-Bb 
RCC1 Repeat P25171_42-89 0.00083 0 CL0186 L 316 360   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=2-136 C nucleosome
A/E=2-136 C nucleus
A/E=2-136 F DNA binding
A/E=2-136 P nucleosome assembly
K/L=2-422 C cytoplasm
K/L=2-422 F chromatin binding
K/L=2-422 F guanyl-nucleotide exchange factor activity
K/L=2-422 P regulation of mitotic cell cycle
K/L=2-422 P regulation of neurogenesis
K/L=2-422 P cell division
K/L=2-422 P central nervous system development
K/L=2-422 P mitosis
K/L=2-422 P regulation of nucleocytoplasmic transport
Sequences
Download file with secondary structure created by Stride  
3mvd.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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L (protein): 
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