General information
PDB ID 3RMD
Title CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO DNA CONTAINING THYMINE GLYCOL
PDB header TRANSFERASE/DNA
Date 2011-04-20
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.98
Kind dna
Organism ENTEROBACTERIA PHAGE RB69
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3rmd.pdb ABCD EFGHIJKL 0
Biounits:
3rmd.pdb1.pdb A EF 1
3rmd.pdb2.pdb B GH 1
3rmd.pdb3.pdb C IJ 1
3rmd.pdb4.pdb D KL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B Family Q38087_363-784 3.9e-28 1 CL0194 A 350 791 EF  S-Bb L-Bb 
DNA_pol_B_exo1 Family Q38087_19-293 2.1e-26 1 CL0219 A 19 293   
DNA_pol_B Family Q38087_363-784 3.9e-28 1 CL0194 B 350 791 GH   
DNA_pol_B_exo1 Family Q38087_19-293 2.1e-26 1 CL0219 B 19 293 GH   
DNA_pol_B Family Q38087_363-784 3.9e-28 1 CL0194 C 350 791 IJ   
DNA_pol_B_exo1 Family Q38087_19-293 2.1e-26 1 CL0219 C 19 293 IJ   
DNA_pol_B Family Q38087_363-784 3.9e-28 1 CL0194 D 350 791 KL   
DNA_pol_B_exo1 Family Q38087_19-293 2.1e-26 1 CL0219 D 19 293 LK   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-903 F nucleotide binding
A/B/C/D=1-903 F DNA binding
A/B/C/D=1-903 F exonuclease activity
A/B/C/D=1-903 F DNA-directed DNA polymerase activity
A/B/C/D=1-903 P DNA replication
A/B/C/D=1-903 P nucleic acid phosphodiester bond hydrolysis
Sequences
Download file with secondary structure created by Stride  
3rmd.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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3rmd.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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B (protein): 
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3rmd.pdb3.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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C (protein): 
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3rmd.pdb4.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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D (protein): 
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