General information
PDB ID 3SJM
Title CRYSTAL STRUCTURE ANALYSIS OF TRF2-DBD-DNA COMPLEX
PDB header DNA/DNA BINDING PROTEIN
Date 2011-06-21
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.35
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3sjm.pdb AB CD 0
Biounits:
3sjm.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Myb_DNA-binding Domain Q15554_489-537 3.7e-14 1 CL0123 A 447 495 CD  H-Bb H-Mj L-Bb L-Mn 
Myb_DNA-binding Domain Q15554_489-537 3.7e-14 1 CL0123 B 447 495 CD  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=483-542 C axon cytoplasm
A/B=483-542 C chromosome, telomeric region
A/B=483-542 C nuclear body
A/B=483-542 C nuclear chromosome, telomeric region
A/B=483-542 C nuclear telomere cap complex
A/B=483-542 C nucleoplasm
A/B=483-542 C nucleus
A/B=483-542 C shelterin complex
A/B=483-542 F double-stranded telomeric DNA binding
A/B=483-542 F enzyme binding
A/B=483-542 F G-rich strand telomeric DNA binding
A/B=483-542 F protein C-terminus binding
A/B=483-542 F protein homodimerization activity
A/B=483-542 F protein-containing complex binding
A/B=483-542 F telomeric DNA binding
A/B=483-542 P cell cycle
A/B=483-542 P cellular senescence
A/B=483-542 P negative regulation of beta-galactosidase activity
A/B=483-542 P negative regulation of cellular senescence
A/B=483-542 P negative regulation of exonuclease activity
A/B=483-542 P negative regulation of gene expression
A/B=483-542 P negative regulation of t-circle formation
A/B=483-542 P negative regulation of telomere capping
A/B=483-542 P negative regulation of telomere maintenance
A/B=483-542 P negative regulation of telomere maintenance via recombination
A/B=483-542 P negative regulation of telomere maintenance via semi-conservative replication
A/B=483-542 P negative regulation of telomere maintenance via telomerase
A/B=483-542 P negative regulation of telomere maintenance via telomere lengthening
A/B=483-542 P negative regulation of telomere single strand break repair
A/B=483-542 P negative regulation of telomeric D-loop disassembly
A/B=483-542 P positive regulation of gene expression
A/B=483-542 P positive regulation of nitric-oxide synthase activity
A/B=483-542 P protection from non-homologous end joining at telomere
A/B=483-542 P protein localization to chromosome, telomeric region
A/B=483-542 P regulation of telomere maintenance
A/B=483-542 P regulation of telomere maintenance via telomerase
A/B=483-542 P RNA-dependent DNA biosynthetic process
A/B=483-542 P telomere capping
A/B=483-542 P telomere maintenance
A/B=483-542 P telomeric D-loop disassembly
A/B=483-542 P telomeric loop formation
Sequences
Download file with secondary structure created by Stride  
3sjm.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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