General information
PDB ID 3SPL
Title CRYSTAL STRUCTURE OF APRATAXIN ORTHOLOG HNT3 IN COMPLEX WITH DNA AND AMP
PDB header HYDROLASE/DNA
Date 2011-07-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism SCHIZOSACCHAROMYCES POMBE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3spl.pdb ABCD EFGH 0
Biounits:
3spl.pdb1.pdb AB EF 1
3spl.pdb2.pdb CD GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HIT Domain O74859_44-156 2.1e-29 1 CL0265 A 44 156 E  L-Bb L-Mj 
zf-C2HE Domain O74859_170-224 6.3e-12 1 CL0361 A 170 224 EF  H-Bb L-Bb 
HIT Domain O74859_44-156 2.1e-29 1 CL0265 B 44 156 F  L-Bb L-Mj 
zf-C2HE Domain O74859_170-224 6.3e-12 1 CL0361 B 170 224 EF  H-Bb L-Bb 
HIT Domain O74859_44-156 2.1e-29 1 CL0265 C 44 156 G  L-Bb L-Mj 
zf-C2HE Domain O74859_170-224 6.3e-12 1 CL0361 C 170 224 HG  H-Bb L-Bb 
HIT Domain O74859_44-156 2.1e-29 1 CL0265 D 44 156 H  L-Bb L-Mj 
zf-C2HE Domain O74859_170-224 6.3e-12 1 CL0361 D 170 224 GH  H-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=33-232 C cytosol
A/B/C/D=33-232 C nucleus
A/B/C/D=33-232 F DNA 5'-adenosine monophosphate hydrolase activity
A/B/C/D=33-232 F DNA-3'-diphospho-5'-guanosine diphosphatase
A/B/C/D=33-232 F double-stranded DNA binding
A/B/C/D=33-232 F double-stranded RNA binding
A/B/C/D=33-232 F GMP binding
A/B/C/D=33-232 F guanosine binding
A/B/C/D=33-232 F mismatched DNA binding
A/B/C/D=33-232 F single-strand break-containing DNA binding
A/B/C/D=33-232 F single-stranded DNA binding
A/B/C/D=33-232 F zinc ion binding
A/B/C/D=33-232 P double-strand break repair
A/B/C/D=33-232 P mismatch repair
A/B/C/D=33-232 P single strand break repair
Sequences
Download file with secondary structure created by Stride  
3spl.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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3spl.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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C (protein): 
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D (protein): 
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