General information
PDB ID 3U2B
Title STRUCTURE OF THE SOX4 HMG DOMAIN BOUND TO DNA
PDB header TRANSCRIPTION/DNA
Date 2011-10-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.4
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3u2b.pdb C AB 0
Biounits:
3u2b.pdb1.pdb C AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HMG_box Domain Q06831_59-127 1.4e-27 1 CL0114 C 3 71 AB  H-Bb H-Mj H-Mn L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
C=57-135 C nucleus
C=57-135 C mitochondrion
C=57-135 F core promoter sequence-specific DNA binding
C=57-135 F RNA polymerase II transcription coactivator activity
C=57-135 F RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
C=57-135 P cellular response to glucose stimulus
C=57-135 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
C=57-135 P cardiac right ventricle morphogenesis
C=57-135 P ventricular septum morphogenesis
C=57-135 P spinal cord motor neuron differentiation
C=57-135 P atrial septum primum morphogenesis
C=57-135 P positive regulation of insulin secretion
C=57-135 P limb bud formation
C=57-135 P endocrine pancreas development
C=57-135 P negative regulation of apoptotic process
C=57-135 P glial cell development
C=57-135 P glial cell proliferation
C=57-135 P positive regulation of translation
C=57-135 P canonical Wnt receptor signaling pathway
C=57-135 P noradrenergic neuron differentiation
C=57-135 P positive regulation of canonical Wnt receptor signaling pathway
C=57-135 P mitral valve morphogenesis
C=57-135 P positive regulation of cell proliferation
C=57-135 P negative regulation of protein export from nucleus
C=57-135 P somatic stem cell maintenance
C=57-135 P protein stabilization
C=57-135 P kidney morphogenesis
C=57-135 P skeletal system development
C=57-135 P positive regulation of apoptotic process
C=57-135 P DNA damage response, detection of DNA damage
C=57-135 P ascending aorta morphogenesis
C=57-135 P T cell differentiation
C=57-135 P sympathetic nervous system development
C=57-135 P neuroepithelial cell differentiation
C=57-135 P negative regulation of protein ubiquitination
C=57-135 P pro-B cell differentiation
C=57-135 P neural tube formation
C=57-135 P positive regulation of N-terminal peptidyl-lysine acetylation
C=57-135 P negative regulation of cell proliferation
C=57-135 P cardiac ventricle formation
Sequences
Download file with secondary structure created by Stride  
3u2b.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
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B (dna): 
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C (protein): 
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