General information
PDB ID 3UKG
Title CRYSTAL STRUCTURE OF RAP1/DNA COMPLEX
PDB header DNA BINDING PROTEIN/DNA
Date 2011-11-09
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.95
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3ukg.pdb A CD 0
Biounits:
3ukg.pdb1.pdb A CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Rap1-DNA-bind Domain P11938_448-578 1.6e-39 1 CL0123 A 448 579 C  H-Bb H-Mj L-Bb L-Mj 
Myb_DNA-binding Domain P11938_360-411 1.6e-11 1 CL0123 A 360 411 CD  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=360-601 C cytosol
A=360-601 C nuclear chromosome
A=360-601 C nuclear chromosome, telomeric region
A=360-601 C nucleus
A=360-601 C protein-DNA complex
A=360-601 C shelterin complex
A=360-601 F cis-regulatory region sequence-specific DNA binding
A=360-601 F DNA binding
A=360-601 F DNA binding, bending
A=360-601 F DNA-binding transcription factor activity
A=360-601 F DNA-binding transcription factor activity, RNA polymerase II-specific
A=360-601 F double-stranded telomeric DNA binding
A=360-601 F G-quadruplex DNA binding
A=360-601 F histone binding
A=360-601 F nucleosomal DNA binding
A=360-601 F RNA polymerase II transcription factor binding
A=360-601 F sequence-specific DNA binding
A=360-601 F TBP-class protein binding
A=360-601 F telomeric DNA binding
A=360-601 F TFIID-class transcription factor complex binding
A=360-601 P chromatin silencing at telomere
A=360-601 P establishment of protein localization to chromatin
A=360-601 P establishment of protein localization to telomere
A=360-601 P G-quadruplex DNA formation
A=360-601 P histone displacement
A=360-601 P negative regulation of chromatin silencing
A=360-601 P negative regulation of transcription by RNA polymerase II
A=360-601 P positive regulation of transcription by RNA polymerase II
A=360-601 P protection from non-homologous end joining at telomere
A=360-601 P regulation of transcription, DNA-templated
A=360-601 P silent mating-type cassette heterochromatin assembly
A=360-601 P subtelomeric heterochromatin assembly
A=360-601 P telomere maintenance
A=360-601 P telomere maintenance via telomere lengthening
Sequences
Download file with secondary structure created by Stride  
3ukg.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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