General information
PDB ID 3VK8
Title CRYSTAL STRUCTURE OF DNA-GLYCOSYLASE BOUND TO DNA CONTAINING THYMINE GLYCOL
PDB header HYDROLASE/DNA
Date 2011-11-10
Experimental method X-RAY DIFFRACTION
Resolution (A) 2
Kind dna
Organism ACANTHAMOEBA POLYPHAGA MIMIVIRUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3vk8.pdb AB CDEF 0
Biounits:
3vk8.pdb1.pdb A CD 1
3vk8.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
H2TH Domain Q5UQ00_135-220 0.00000000000019 1 CL0303 A 135 218 D   
Fapy_DNA_glyco Domain Q5UQ00_2-119 0.000000000019 1 No_clan A 2 119 CD   
H2TH Domain Q5UQ00_135-220 0.00000000000019 1 CL0303 B 135 218 F   
Fapy_DNA_glyco Domain Q5UQ00_2-119 0.000000000019 1 No_clan B 2 119 EF   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-287 F damaged DNA binding
A/B=1-287 F oxidized purine nucleobase lesion DNA N-glycosylase activity
A/B=1-287 F zinc ion binding
A/B=1-287 P nucleotide-excision repair
A/B=1-287 P base-excision repair
Sequences
Download file with secondary structure created by Stride  
3vk8.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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3vk8.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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