General information
PDB ID 3VYB
Title CRYSTAL STRUCTURE OF METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/HMCG SEQUENCE
PDB header HYDROLASE/DNA
Date 2012-09-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.4
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb3vyb.pdb A BC 0
Biounits:
3vyb.pdb1.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
MBD Domain Q9Z2D7_71-135 1e-19 1 CL0081 A 72 134 BC  H-Bb S-Bb S-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=69-136 C chromatin
A=69-136 C cytoplasm
A=69-136 C host cell nucleus
A=69-136 C nuclear speck
A=69-136 C nucleus
A=69-136 F DNA binding
A=69-136 F pyrimidine-specific mismatch base pair DNA N-glycosylase activity
A=69-136 P cellular response to DNA damage stimulus
A=69-136 P DNA methylation
A=69-136 P DNA repair
A=69-136 P intrinsic apoptotic signaling pathway in response to DNA damage
A=69-136 P mitotic G2 DNA damage checkpoint
A=69-136 P response to radiation
Sequences
Download file with secondary structure created by Stride  
3vyb.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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