General information
PDB ID 4PJO
Title MINIMAL U1 SNRNP
PDB header SPLICING
Date 2014-05-12
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.3
Kind rna
Organism HOMO SAPIENS
Download
complex 		View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4pjo.pdb ABCDEFGKLabcdefgklOPQRSTUNMopqrstunm 1X2x3Y4y 0
Biounits:
4pjo.pdb1.pdb ABCDEFGKL 1X 1
4pjo.pdb2.pdb abcdefgkl 2x 1
4pjo.pdb3.pdb OPQRSTUNM 3Y 1
4pjo.pdb4.pdb opqrstunm 4y 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
LSM Domain P62318_8-73 2.6e-16 1 CL0527 a 8 73 2   
LSM Domain P62318_8-73 2.7e-16 1 CL0527 A 8 73 1   
LSM Domain P14678_7-82 1.7e-21 1 CL0527 b 7 82 2   
LSM Domain P14678_7-82 3.1e-21 1 CL0527 B 7 82 1   
LSM Domain P62314_5-70 2.1e-19 1 CL0527 C 5 70 1   
LSM Domain P62314_5-70 2.1e-19 1 CL0527 C 5 70 1   
LSM Domain P62314_5-70 2.2e-19 1 CL0527 c 5 70 2   
LSM Domain P62314_5-70 2.2e-19 1 CL0527 c 5 70 2   
LSM Domain P62316_33-111 1.1e-19 1 CL0527 d 33 111 2   
LSM Domain P62316_33-111 3.1e-19 1 CL0527 D 33 111 1   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 E 23 89 1   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 E 23 89 1   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 e 23 89 2   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 e 23 89 2   
LSM Domain P62306_9-74 1e-21 1 CL0527 F 9 74 1   
LSM Domain P62306_9-74 1.1e-21 1 CL0527 f 9 74 2   
LSM Domain P62308_7-72 6e-23 1 CL0527 g 7 72 2   
LSM Domain P62308_7-72 6.3e-23 1 CL0527 G 7 72 1   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 L 2 38 1X   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 L 2 38 1X   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 l 2 38 2x   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 l 2 38 2x   
zf-U1 Domain P09234_4-38 9.1e-23 1 CL0361 m 2 38 4y   
zf-U1 Domain P09234_4-38 9.1e-23 1 CL0361 m 2 38 4y   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 M 2 38 3Y   
zf-U1 Domain P09234_4-38 1.1e-22 1 CL0361 M 2 38 3Y   
LSM Domain P62318_8-73 2.4e-16 1 CL0527 o 8 73 4   
LSM Domain P62318_8-73 2.5e-16 1 CL0527 O 8 73 3   
LSM Domain P14678_7-82 3.1e-21 1 CL0527 P 7 82 3   
LSM Domain P14678_7-82 3.1e-21 1 CL0527 P 7 82 3   
LSM Domain P14678_7-82 3.5e-21 1 CL0527 p 7 82 4   
LSM Domain P14678_7-82 3.5e-21 1 CL0527 p 7 82 4   
LSM Domain P62314_5-70 2.1e-19 1 CL0527 Q 5 70 3   
LSM Domain P62314_5-70 2.2e-19 1 CL0527 q 5 70 4   
LSM Domain P62316_33-111 1.2e-19 1 CL0527 r 33 111 4   
LSM Domain P62316_33-111 2.6e-19 1 CL0527 R 33 111 3   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 S 23 89 3   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 S 23 89 3   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 s 23 89 4   
LSM Domain P62304_23-89 4.9e-18 1 CL0527 s 23 89 4   
LSM Domain P62306_9-74 1.1e-21 1 CL0527 T 9 74 3   
LSM Domain P62306_9-74 1.1e-21 1 CL0527 T 9 74 3   
LSM Domain P62306_9-74 1.1e-21 1 CL0527 t 9 74 4   
LSM Domain P62306_9-74 1.1e-21 1 CL0527 t 9 74 4   
LSM Domain P62308_7-72 6e-23 1 CL0527 u 7 72 4   
LSM Domain P62308_7-72 1.3e-21 1 CL0527 U 7 72 3   
U1snRNP70_N Family P08621_3-59 3.2e-16 1 CL0221 k 3 59 2   
U1snRNP70_N Family P08621_3-59 3.4e-16 1 CL0221 K 3 59 1   
U1snRNP70_N Family P08621_3-59 3.4e-16 1 CL0221 n 3 59 4   
U1snRNP70_N Family P08621_3-59 1.1e-14 1 CL0221 N 6 58 3   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
4pjo.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
1 (rna): 
Click "SHOW" for view sequence
X (rna): 
Click "SHOW" for view sequence
4pjo.pdb2.pdb:   [ download sequences in FASTA format ]
a (protein): 
Click "SHOW" for view sequence
b (protein): 
Click "SHOW" for view sequence
c (protein): 
Click "SHOW" for view sequence
d (protein): 
Click "SHOW" for view sequence
e (protein): 
Click "SHOW" for view sequence
f (protein): 
Click "SHOW" for view sequence
g (protein): 
Click "SHOW" for view sequence
k (protein): 
Click "SHOW" for view sequence
l (protein): 
Click "SHOW" for view sequence
2 (rna): 
Click "SHOW" for view sequence
x (rna): 
Click "SHOW" for view sequence
4pjo.pdb3.pdb:   [ download sequences in FASTA format ]
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
Q (protein): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
T (protein): 
Click "SHOW" for view sequence
U (protein): 
Click "SHOW" for view sequence
3 (rna): 
Click "SHOW" for view sequence
Y (rna): 
Click "SHOW" for view sequence
4pjo.pdb4.pdb:   [ download sequences in FASTA format ]
m (protein): 
Click "SHOW" for view sequence
n (protein): 
Click "SHOW" for view sequence
o (protein): 
Click "SHOW" for view sequence
p (protein): 
Click "SHOW" for view sequence
q (protein): 
Click "SHOW" for view sequence
r (protein): 
Click "SHOW" for view sequence
s (protein): 
Click "SHOW" for view sequence
t (protein): 
Click "SHOW" for view sequence
u (protein): 
Click "SHOW" for view sequence
4 (rna): 
Click "SHOW" for view sequence
y (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2020

text