General information
PDB ID 4ADX
Title THE CRYO-EM STRUCTURE OF THE ARCHAEAL 50S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 6
PDB header RIBOSOME
Date 2012-01-04
Experimental method ELECTRON MICROSCOPY
Resolution (A) 6.6
Kind rna
Organism METHANOTHERMOBACTER THERMAUTOTROPHICUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4adx.pdb 1234567ABCDEFGHIJKLMNOPQRSTUVWXYZ 089 0
Biounits:
4adx.pdb1.pdb 1234567ABCDEFGHIJKLMNOPQRSTUVWXYZ 089 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L7Ae Domain P0DJ59_8-102 4.4e-23 1 CL0101 6 8 102   
Ribosomal_L2_C Domain P20276_90-225 4.9e-46 1 CL0107 A 89 224   
Ribosomal_L2 Domain P20276_11-83 3.2e-17 1 CL0021 A 10 82   
Ribosomal_L5 Domain P14124_12-65 5e-16 1 CL0652 D 11 64   
Ribosomal_L5_C Domain P14124_69-166 3.8e-08 1 No_clan D 68 152   
Ribosomal_L6 Domain P14135_8-80 5.8e-15 1 No_clan E 7 79   
Ribosomal_L6 Domain P14135_92-166 9.7e-14 1 No_clan E 91 165   
Ribosomal_L7Ae Domain P12743_15-108 2.3e-25 1 CL0101 F 14 108   
Ribosomal_L18A Domain O27647_2-60 9.9e-11 1 No_clan G 2 60   
Ribosomal_L14 Domain P22450_12-132 4.8e-36 1 No_clan K 12 132   
Ribosomal_L22 Domain P10970_17-149 7.2e-25 1 No_clan R 16 148   
Ribosomal_L30 Domain P14121_2-52 7.3e-11 1 No_clan W 2 52   
Ribosomal_L37e Family P32410_3-56 1.9e-22 1 CL0167 1 2 55   
Ribosomal_L39 Family P22452_8-49 1.9e-15 1 No_clan 2 7 48   
Ribosomal_L44 Family P32411_16-91 1.1e-25 1 CL0167 3 16 91   
Ribosomal_L34e Family P0DJ23_8-96 1.6e-34 1 No_clan 4 8 96   
Ribosomal_L40e Family P0DJ25_80-127 4.1e-26 1 CL0167 5 80 127   
Ribosomal_L14e Family Q24C27_44-80 3.9e-05 1 CL0107 7 44 80   
KOW Family 0.00028 0 CL0107 7 9 39
Ribosomal_L3 Family P20279_2-338 1.2e-109 1 CL0575 B 1 337   
Ribosomal_L4 Family P12735_16-246 1.4e-40 1 No_clan C 16 246   
Ribosomal_L16 Family P60617_12-166 3e-24 1 No_clan H 12 167   
eIF-6 Family O27648_4-199 7.4e-65 1 CL0197 I 4 218   
Ribosomal_L13 Family 6.4e-06 1 No_clan J 10 114
Ribosomal_L27A Family P12737_25-143 8.4e-18 1 CL0588 L 24 142   
Ribosomal_L15e Family P60618_5-186 1.4e-76 1 CL0652 M 4 185   
Ribosomal_L5e Family P14123_5-100 5.9e-17 1 CL0267 N 4 99   
Ribosomal_L5e Family P14123_92-133 2.3e-07 1 CL0267 N 91 132   
Ribosomal_L18 Family 8.6e-06 0 CL0588 O 1 115
Ribosomal_L19e Family P14119_3-144 6.4e-56 1 No_clan P 2 143   
Ribosomal_L21e Family P12734_2-96 6.6e-26 1 CL0107 Q 2 94   
Ribosomal_L23 Family P12732_4-77 1.1e-15 1 No_clan S 3 76   
Ribosomal_L26 Family P10972_2-116 3.9e-23 1 No_clan T 1 115   
KOW Family P10972_45-76 3.7e-08 1 CL0107 T 44 75   
Ribosomal_L24e Family P14116_5-57 2.3e-20 1 CL0175 U 4 55   
Ribosomal_L29 Family P10971_7-63 6e-20 1 CL0346 V 6 62   
Ribosomal_L31e Family P18138_8-85 1.2e-09 1 No_clan X 8 84   
Ribosomal_L32e Family P12736_126-231 1.5e-35 1 No_clan Y 125 230   
Ribosomal_L37ae Family P60619_11-82 1.3e-28 1 CL0167 Z 34 106   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
4adx.pdb1.pdb:   [ download sequences in FASTA format ]
1 (protein): 
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2 (protein): 
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3 (protein): 
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4 (protein): 
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5 (protein): 
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6 (protein): 
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7 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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0 (rna): 
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8 (rna): 
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9 (rna): 
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