General information
PDB ID 4BDP
Title CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES
PDB header TRANSFERASE/DNA
Date 1997-11-17
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.8
Kind dna
Organism GEOBACILLUS STEAROTHERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4bdp.pdb A PT 0
Biounits:
4bdp.pdb1.pdb A PT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_A Family P52026_497-874 1.2e-163 1 No_clan A 497 874 PT  H-Bb H-Mj H-Mn S-Bb L-Bb L-Mj L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a/b)
  Fold: Ribonuclease H-like motif
    Superfamily: Ribonuclease H-like
      Family: DnaQ-like 3'-5' exonuclease
Exonuclease domain of prokaryotic DNA polymerase A 297 468 P  H-Bb L-Bb 
Class: Multi-domain proteins (alpha and beta)
  Fold: DNA/RNA polymerases
    Superfamily: DNA/RNA polymerases
      Family: DNA polymerase I
DNA polymerase I (Klenow fragment) A 469 876 PT -
GO terms
Protein chains: GO type: GO description:
A=304-876 C intracellular
A=304-876 F DNA-directed DNA polymerase activity
A=304-876 F 5'-3' exonuclease activity
A=304-876 F 3'-5' exonuclease activity
A=304-876 F DNA binding
A=304-876 P DNA repair
A=304-876 P nucleic acid phosphodiester bond hydrolysis
A=304-876 P DNA replication
Sequences
Download file with secondary structure created by Stride  
4bdp.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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