General information
PDB ID 4CYC
Title CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
PDB header TRANSCRIPTION
Date 2014-04-10
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.36
Kind dna
Organism DROSOPHILA MELANOGASTER
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4cyc.pdb AB CD 0
Biounits:
4cyc.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Homeodomain Domain P83949_299-352 2.7e-21 1 CL0123 A 8 58 CD  H-Bb H-Mj L-Bb L-Mn 
Homeodomain Domain P40427_242-298 3.7e-18 1 CL0123 B 3 58 CD  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=233-367 C nucleus
A=233-367 C polytene chromosome band
A=233-367 C protein-DNA complex
A=233-367 C transcription regulator complex
A=233-367 C transcription repressor complex
A=233-367 F cis-regulatory region sequence-specific DNA binding
A=233-367 F DNA binding
A=233-367 F DNA-binding transcription factor activity, RNA polymerase II-specific
A=233-367 F protein domain specific binding
A=233-367 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A=233-367 F sequence-specific DNA binding
A=233-367 F transcription cofactor binding
A=233-367 P anterior Malpighian tubule development
A=233-367 P anterior/posterior pattern specification
A=233-367 P cell fate determination
A=233-367 P dorsal vessel aortic cell fate commitment
A=233-367 P endoderm formation
A=233-367 P haltere development
A=233-367 P heart development
A=233-367 P imaginal disc-derived leg morphogenesis
A=233-367 P mesodermal cell fate specification
A=233-367 P midgut development
A=233-367 P muscle cell fate specification
A=233-367 P negative regulation of gene silencing
A=233-367 P negative regulation of transcription by RNA polymerase II
A=233-367 P negative regulation of transcription, DNA-templated
A=233-367 P open tracheal system development
A=233-367 P positive regulation of muscle organ development
A=233-367 P positive regulation of transcription, DNA-templated
A=233-367 P regulation of cell fate specification
A=233-367 P regulation of imaginal disc growth
A=233-367 P regulation of transcription, DNA-templated
A=233-367 P somatic muscle development
A=233-367 P specification of animal organ identity
A=233-367 P specification of segmental identity, thorax
B=238-312 C cytoplasm
B=238-312 C nucleus
B=238-312 C protein-DNA complex
B=238-312 C RNA polymerase II transcription regulator complex
B=238-312 C transcription regulator complex
B=238-312 F activating transcription factor binding
B=238-312 F cis-regulatory region sequence-specific DNA binding
B=238-312 F DNA binding
B=238-312 F DNA-binding transcription factor activity
B=238-312 F DNA-binding transcription factor activity, RNA polymerase II-specific
B=238-312 F protein heterodimerization activity
B=238-312 F sequence-specific DNA binding
B=238-312 F transcription coactivator activity
B=238-312 F transcription coregulator activity
B=238-312 F transcription factor binding
B=238-312 P animal organ morphogenesis
B=238-312 P brain development
B=238-312 P embryonic organ development
B=238-312 P eye development
B=238-312 P neuron development
B=238-312 P oenocyte development
B=238-312 P peripheral nervous system development
B=238-312 P positive regulation of transcription by RNA polymerase II
B=238-312 P positive regulation of transcription, DNA-templated
B=238-312 P regulation of cell fate specification
B=238-312 P regulation of transcription by RNA polymerase II
B=238-312 P salivary gland boundary specification
B=238-312 P somatic muscle development
Sequences
Download file with secondary structure created by Stride  
4cyc.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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