General information
PDB ID 4D1Q
Title HERMES TRANSPOSASE BOUND TO ITS TERMINAL INVERTED REPEAT
PDB header PROTEIN-DNA COMPLEX
Date 2014-05-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.4
Kind dna
Organism MUSCA DOMESTICA
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4d1q.pdb ABGH CDEFIJKL 0
Biounits:
4d1q.pdb1.pdb ABGHMNST CDEFIJKLOPQRUVWX 0
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DBD_Tnp_Hermes Domain Q25442_83-146 3.4e-40 1 No_clan A 81 146 CEF  H-Bb H-Mj L-Mj 
Dimer_Tnp_hAT Domain Q25442_523-604 2.9e-24 1 No_clan A 523 604 CDEF  H-Bb H-Mn L-Bb L-Mn 
DBD_Tnp_Hermes Domain Q25442_83-146 3.7e-41 1 No_clan B 79 146 CDE  H-Bb H-Mj L-Bb 
Dimer_Tnp_hAT Domain Q25442_523-604 2.9e-24 1 No_clan B 523 604 CDEF  H-Bb H-Mn L-Bb L-Mn 
DBD_Tnp_Hermes Domain Q25442_83-146 6.7e-39 1 No_clan G 83 146 IKL  H-Bb H-Mj L-Bb 
Dimer_Tnp_hAT Domain Q25442_523-604 2.9e-24 1 No_clan G 523 604 IJKL  H-Bb H-Mn L-Mn 
DBD_Tnp_Hermes Domain Q25442_83-146 6.9e-39 1 No_clan H 83 146 IJK  H-Bb H-Mj 
Dimer_Tnp_hAT Domain Q25442_523-604 3e-24 1 No_clan H 523 604 IJKL  H-Bb H-Mn L-Bb L-Mn 
DBD_Tnp_Hermes Domain 3.4e-40 1 No_clan M 81 146 OQR
Dimer_Tnp_hAT Domain 2.9e-24 1 No_clan M 523 604 OPQR
DBD_Tnp_Hermes Domain 3.7e-41 1 No_clan N 79 146 OPQ
Dimer_Tnp_hAT Domain 2.9e-24 1 No_clan N 523 604 OPQR
DBD_Tnp_Hermes Domain 6.7e-39 1 No_clan S 83 146 UWX
Dimer_Tnp_hAT Domain 2.9e-24 1 No_clan S 523 604 UVWX
DBD_Tnp_Hermes Domain 6.9e-39 1 No_clan T 83 146 UVW
Dimer_Tnp_hAT Domain 3e-24 1 No_clan T 523 604 UVWX
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
4d1q.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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E (dna): 
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F (dna): 
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I (dna): 
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J (dna): 
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K (dna): 
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L (dna): 
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O (dna): 
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P (dna): 
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Q (dna): 
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R (dna): 
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U (dna): 
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V (dna): 
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W (dna): 
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X (dna): 
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A (protein): 
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B (protein): 
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G (protein): 
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H (protein): 
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M (protein): 
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N (protein): 
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S (protein): 
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T (protein): 
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