General information
PDB ID 4GDF
Title A CRYSTAL STRUCTURE OF SV40 LARGE T ANTIGEN
PDB header HYDROLASE/DNA
Date 2012-07-31
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism SIMIAN VIRUS 40
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4gdf.pdb ABEF CDGH 0
Biounits:
4gdf.pdb1.pdb AB CD 1
4gdf.pdb2.pdb EF GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
T_Ag_DNA_bind Domain P03070_136-229 1.2e-37 1 CL0169 A 136 229 CD   
T_Ag_DNA_bind Domain P03070_136-229 1.2e-37 1 CL0169 B 136 229 CD   
T_Ag_DNA_bind Domain P03070_136-229 1.2e-37 1 CL0169 E 136 229 GH  H-Bb S-Bb L-Bb L-Mj 
T_Ag_DNA_bind Domain P03070_136-229 1.2e-37 1 CL0169 F 136 229 GH  H-Bb S-Bb S-Mj L-Bb L-Mj 
Polyoma_lg_T_C Family P03070_265-627 2.9e-245 1 CL0023 A 265 627 CD   
Polyoma_lg_T_C Family P03070_265-627 2.9e-245 1 CL0023 B 265 627 D   
Polyoma_lg_T_C Family P03070_265-627 2.9e-245 1 CL0023 E 265 627 GH  H-Bb H-Mj L-Bb 
Polyoma_lg_T_C Family P03070_265-627 2.9e-245 1 CL0023 F 265 627 H  L-Bb 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
4gdf.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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4gdf.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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E (protein): 
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F (protein): 
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