General information
PDB ID 4IOA
Title CRYSTAL STRUCTURE OF COMPOUND 4E BOUND TO LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS
PDB header RIBOSOME/RIBOSOME INHIBITOR
Date 2013-01-07
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.2
Kind rna
Organism DEINOCOCCUS RADIODURANS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4ioa.pdb ABCDEFGHIJKLMNOPQRSTUVWZ1234 XY 0
Biounits:
4ioa.pdb1.pdb ABCDEFGHIJKLMNOPQRSTUVWZ1234 XY 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L36 Domain Q9RSK0_2-36 5.9e-20 1 No_clan 4 1 37 X   
Ribosomal_L2_C Domain Q9RXJ9_126-251 1.2e-52 1 CL0107 A 126 251 X   
Ribosomal_L2 Domain Q9RXJ9_42-119 9.1e-33 1 CL0021 A 42 119 X   
Ribosomal_L5_C Domain Q9RXJ0_84-177 9.2e-41 1 No_clan D 84 177 XY   
Ribosomal_L5 Domain Q9RXJ0_24-80 2.2e-25 1 CL0652 D 24 80 XY   
Ribosomal_L6 Domain Q9RSL3_11-82 4.5e-19 1 No_clan E 11 82 X   
Ribosomal_L6 Domain Q9RSL3_90-165 1.2e-17 1 No_clan E 90 165 X   
Ribosomal_L11 Domain Q9RSS7_70-138 2.9e-24 1 No_clan F 74 138 X   
Ribosomal_L14 Domain Q9RXJ2_2-133 2.2e-52 1 No_clan H 1 134 X   
Ribosomal_L22 Domain Q9RXJ7_26-129 5.4e-35 1 No_clan P 26 129 X   
Ribosomal_TL5_C Domain Q9RX88_91-175 1.9e-24 1 No_clan S 91 175 X   
Ribosomal_L25p Domain Q9RX88_3-83 0.000000000044 1 No_clan S 3 83 XY   
Ribosomal_L30 Domain Q9RSL0_1-51 3.4e-19 1 No_clan W 1 51 XY   
Ribosomal_L33 Family Q9RSS4_8-54 2.7e-19 1 CL0167 1 8 54   
Ribosomal_L34 Family Q9RSH2_1-44 1.5e-25 1 No_clan 2 1 44   
Ribosomal_L35p Family Q9RSW6_2-62 2.7e-17 1 No_clan 3 2 62   
Ribosomal_L3 Family Q9RXK2_86-181 4.4e-16 1 CL0575 B 87 181 X   
Ribosomal_L4 Family Q9RXK1_19-198 9e-55 1 No_clan C 19 198 X   
Ribosomal_L13 Family Q9RXY1_40-164 8.2e-51 1 No_clan G 40 164 X   
Ribosomal_L27A Family Q9RSK9_26-142 2.7e-28 1 CL0588 I 26 142 X   
Ribosomal_L16 Family Q9RXJ5_7-130 8e-50 1 No_clan J 6 133 XY   
Ribosomal_L17 Family Q9RSJ5_20-116 2.3e-33 1 No_clan K 20 115 X   
Ribosomal_L18p Family Q9RSL2_4-114 3.2e-35 1 CL0267 L 8 111 XY   
Ribosomal_L19 Family Q9RWB4_11-109 2.5e-40 1 CL0107 M 11 109 X   
Ribosomal_L20 Family Q9RSW7_3-109 9.6e-46 1 No_clan N 3 109 X   
Ribosomal_L21p Family Q9RY64_1-98 1.4e-29 1 No_clan O 5 98 X   
Ribosomal_L23 Family Q9RXK0_5-90 1e-29 1 No_clan Q 5 90 X   
ribosomal_L24 Family Q9RXJ1_51-114 2.6e-21 1 No_clan R 51 113 X   
KOW Family Q9RXJ1_18-49 0.000000083 1 CL0107 R 18 49 X   
Ribosomal_L27 Family Q9RY65_2-81 8e-36 1 No_clan T 2 81 XY   
Ribosomal_L28 Family Q9RRG8_8-73 0.0000000064 1 No_clan U 8 73 X   
Ribosomal_L29 Family Q9RXJ4_4-59 2.3e-17 1 CL0346 V 4 59 X   
Ribosomal_L32p Family P49228_5-59 4.2e-29 1 CL0167 Z 5 59 X   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
4ioa.pdb1.pdb:   [ download sequences in FASTA format ]
1 (protein): 
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2 (protein): 
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3 (protein): 
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4 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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Z (protein): 
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X (rna): 
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Y (rna): 
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