General information
PDB ID 4KA4
Title CRYSTAL STRUCTURE OF A PROTEOLYTICALLY DEFINED ZBETA DOMAIN OF HUMAN DAI (ZBP1, DLM-1)
PDB header DNA BINDING PROTEIN/DNA
Date 2013-04-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4ka4.pdb ABDE CFGH 0
Biounits:
4ka4.pdb1.pdb AD CH 1
4ka4.pdb2.pdb BE FG 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
z-alpha Domain Q9H171_97-152 7.4e-06 1 CL0123 A 105 162 C  H-Bb H-Mj S-Bb 
z-alpha Domain Q9H171_97-152 1.5e-05 1 CL0123 B 107 162 G  H-Bb H-Mj 
z-alpha Domain Q9H171_97-152 9.7e-06 1 CL0123 D 106 159 H  H-Bb H-Mj S-Bb 
z-alpha Domain Q9H171_97-152 1.5e-05 1 CL0123 E 107 162 F  H-Bb H-Mj S-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/D/E=96-165 C cytoplasm
A/B/D/E=96-165 C cytosol
A/B/D/E=96-165 C nucleus
A/B/D/E=96-165 F DNA binding
A/B/D/E=96-165 F double-stranded RNA binding
A/B/D/E=96-165 F identical protein binding
A/B/D/E=96-165 F left-handed Z-DNA binding
A/B/D/E=96-165 P activation of innate immune response
A/B/D/E=96-165 P apoptotic process
A/B/D/E=96-165 P defense response to virus
A/B/D/E=96-165 P innate immune response
A/B/D/E=96-165 P positive regulation of apoptotic process
A/B/D/E=96-165 P positive regulation of inflammatory response
A/B/D/E=96-165 P positive regulation of necroptotic process
A/B/D/E=96-165 P positive regulation of type I interferon production
A/B/D/E=96-165 P positive regulation of type I interferon-mediated signaling pathway
A/B/D/E=96-165 P pyroptosis
A/B/D/E=96-165 P regulation of inflammatory response
A/B/D/E=96-165 P regulation of interleukin-1-mediated signaling pathway
A/B/D/E=96-165 P regulation of type I interferon production
A/B/D/E=96-165 P viral process
Sequences
Download file with secondary structure created by Stride  
4ka4.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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H (dna): 
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A (protein): 
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D (protein): 
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4ka4.pdb2.pdb:   [ download sequences in FASTA format ]
F (dna): 
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G (dna): 
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B (protein): 
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E (protein): 
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