General information
PDB ID 4OIQ
Title CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSCRIPTION INITIATION COMPLEX SOAKED WITH GE23077 AND RIFAMPICIN
PDB header TRANSCRIPTION, TRANSFERASE/ANTIBIOTIC
Date 2014-01-20
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.62
Kind dna
Organism THERMUS THERMOPHILUS, ACTINOMADURA SP.
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb4oiq.pdb ABCDEF GH 0
Biounits:
4oiq.pdb1.pdb ABCDEF GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain Q5SHR6_52-180 1.9e-25 1 No_clan A 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1.8e-24 1 CL0509 A 26 222   
RNA_pol_A_bac Domain Q5SHR6_52-180 1.7e-25 1 No_clan B 52 180   
RNA_pol_L Domain Q5SHR6_26-222 1.6e-24 1 CL0509 B 26 222   
RNA_pol_Rpb2_6 Domain Q8RQE9_596-1026 6.9e-152 1 CL0410 C 596 1026 G   
RNA_pol_Rpb2_3 Domain Q8RQE9_393-461 4.1e-29 1 No_clan C 393 461 HG  L-Mj L-Mn 
RNA_pol_Rpb2_7 Domain Q8RQE9_1028-1104 5.2e-26 1 No_clan C 1028 1104 G   
RNA_pol_Rpb2_45 Domain Q8RQE9_471-535 1.3e-24 1 No_clan C 471 535   
RNA_pol_Rpb2_2 Domain Q8RQE9_142-334 0.000000000057 1 No_clan C 142 334 H   
RNA_pol_Rpb1_1 Domain Q8RQE8_431-618 2.7e-46 1 No_clan D 430 618 G  H-Bb 
RNA_pol_Rpb1_2 Domain Q8RQE8_620-765 1.2e-35 1 No_clan D 620 765 G   
RNA_pol_Rpb1_5 Domain Q8RQE8_1064-1296 4e-34 1 No_clan D 1064 1286 G  H-Bb 
RNA_pol_Rpb1_1 Domain Q8RQE8_3-191 3.1e-33 1 No_clan D 3 191   
RNA_pol_Rpb1_3 Domain Q8RQE8_768-954 8.8e-29 1 No_clan D 768 954   
RNA_pol_Rpb1_5 Domain Q8RQE8_1266-1432 0.000000000000053 1 No_clan D 1255 1432   
RNA_pol_Rpb1_4 Domain Q8RQE8_983-1069 0.0000000000001 1 No_clan D 983 1068   
Sigma70_r2 Domain Q5SKW1_187-257 3e-20 1 CL0123 F 187 257 H   
Sigma70_r4 Domain Q5SKW1_357-410 1.7e-18 1 CL0123 F 357 410   
RNA_pol_Rpb2_1 Family Q8RQE9_17-380 4.5e-38 1 No_clan C 17 380 H   
RNA_pol_Rpb6 Family Q8RQE7_8-75 0.00000035 1 No_clan E 8 75   
Sigma70_r3 Family Q5SKW1_266-345 2.5e-26 1 CL0123 F 266 345 G   
Sigma70_r1_2 Family Q5SKW1_79-112 8.7e-17 1 No_clan F 79 112 H   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
4oiq.pdb1.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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